1Yang Z. Computational molecular evolution[M]. Oxford: Ox-ford University Press, 2006.
2Yang Z. PAML: A program package for phylogenetic analy-sis by maximum likelihood[J]. Computer Applications in the Biosciences , CABIOS, 1997, 13(5): 555-556.
3Schabauer H, Valle M, Stockinger H, et al. Toward a su-percomputing approach to large scale darwinian evolutionj C] II Phylogenetics , New Data, New Phylogenetic Challenges Follow-up Meeting, 2011: 1.
4Schabauer H, Valle M, Pacher C, et al. SlimCodeML: An optimized version of codeML for the branch-site model[C] II Proc of the 26th IEEE International on Parallel and Distribu-ted Processing Symposium Workshops &. PhD Forum (lP-DPSW) , 2012:706-714.
5Yang Z, Yoder A D. Estimation of the transition/transver-sion rate bias and species sampling[J].Journal of Molecular Evolution, 1999, 48(3) :274-283.
6Val ken borg D, Burzykowski T. A Markov-chain model for the analysis of high-resolution enzymatically 180-labeled mass spectra[J]. Statistical Applications in Genetics and Molecu-lar Biology, 2011, 10(1): 1-37.
7Hasegawa M, Kishino H, Saitou N. On the maximum likeli-hood method in molecular phylogenetics] L].Journal of Mo-lecular Evolution, 1991, 32(5) :443-445.
9ZhangJ Z, Nielsen R, Yang Z. Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level[J]. Molecular Biology and Evolution, 2005., 22(12) :2472-2479.
10van der Pas R. An overview of OpenMP 3. o [EB/OL]. [2009-01-14]. http://openmp. org/mp-documents/ntu-banderpas. pdf.