A specialized test of two-hybrid library type three-frame cDNA yeast for Muskmelon Fusarium oxysporum using the switching mechanism at the 5'end of RNA template(SMART)technology was constructed to screen for inter...A specialized test of two-hybrid library type three-frame cDNA yeast for Muskmelon Fusarium oxysporum using the switching mechanism at the 5'end of RNA template(SMART)technology was constructed to screen for interaction protein genes for wilt disease and to further research the molecular mechanisms of Fusarium oxysporum pathogenesis to explain the interactions between plant and pathogen.A 500-bp cDNA was purified and extracted using SMART and LD-PCR technology to synthesize ds cDNA and was then homogenized and purified to remove the fragments.After processing,the ds cDNA was connected to three types of reading frame pGADT7-SfiI carriers,and the three connection products in E.coli Electrocell were used to build the primary cDNA library.The titer of three ORF cDNA primary library storage capacities was 2.6×10^6,1.8×10^6 and 3×10^6 cfu;the PCR identification of the ORF 1 and 2 gene recombination rate was 94%,the ORF 3 gene recombination rate was 100%,and the insert length distribution was 0.5-4.0 kb as a single band.To reach the quality requirements for library construction,three kinds of reading frame cDNA primary libraries were mixed and amplified,and the plasmid was transformed into the Y187 yeast strain.The titer of the Y187 yeast library was determined to be 3.5×107 cfu?mL-1,and the base of the yeast library was approximately 1 600 000 cfu.The results showed that the construction of muskmelon Fusarium-specific two-hybrid library type three-frame cDNA yeast had a higher reservoir capacity and recombination rate and met the yeast two-hybrid screening requirements.展开更多
【目的】深入探究麦根腐平脐蠕孢(Bipolaris sorokiniana)生长发育及致病力的分子作用机制,并鉴定BsTup1的互作蛋白。【方法】利用麦根腐平脐蠕孢(B.sorokiniana)孢子和不同时期的菌丝体为材料,构建酵母双杂交cDNA文库,以BsTup1基因为...【目的】深入探究麦根腐平脐蠕孢(Bipolaris sorokiniana)生长发育及致病力的分子作用机制,并鉴定BsTup1的互作蛋白。【方法】利用麦根腐平脐蠕孢(B.sorokiniana)孢子和不同时期的菌丝体为材料,构建酵母双杂交cDNA文库,以BsTup1基因为诱饵来筛选酵母双杂交文库,确定与BsTup1相互作用的蛋白。【结果】1)利用SMART(switching mechanism at 5′end of the RNA transcript)技术首次成功构建了麦根腐平脐蠕孢(B.sorokini-ana)分生孢子和菌丝体的混合cDNA文库。文库鉴定结果表明,构建的cDNA文库库容为4.8×10^(7) cfu·mL^(-1),文库插入片段重组率达100%且平均大小为1000 bp。2)构建了pGBKT7-BsTup1诱饵载体,无自激活活性。3)使用诱饵蛋白载体pGBKT7-BsTup1对麦根腐平脐蠕孢(B.sorokiniana)酵母双杂交cDNA文库进行筛选,经测序、序列比对和酵母回转验证,获得38个与BsTup1相互作用的候选蛋白。【结论】成功构建了麦根腐平脐蠕孢(B.sorokiniana)的cDNA文库,并鉴定出38个与BsTup1相互作用的候选蛋白。展开更多
以短季棉中棉所36(CCRI 36)顶端分生组织和花蕾为材料,以DSN(duplex-specific nuclease)均一化技术与SMART(switching mechanism at 5′end of RNAtranscript)建库技术相结合,构建CCRI 36花发育期均一化全长cDNA文库。经检测原始文库滴...以短季棉中棉所36(CCRI 36)顶端分生组织和花蕾为材料,以DSN(duplex-specific nuclease)均一化技术与SMART(switching mechanism at 5′end of RNAtranscript)建库技术相结合,构建CCRI 36花发育期均一化全长cDNA文库。经检测原始文库滴度为1.7×106cfumL-1。随机挑取100个克隆,利用PCR方法测得文库重组率达100%,插入片段平均长度为1.2kb。以两个高丰度表达基因Histon3和UBQ7为探针,进行虚拟Northern blot检测显示,其丰度在均一化cDNA中均明显降低,说明均一化效果显著,为节约筛库成本和EST有效测序奠定了基础;同时,利用常规PCR扩增技术从cDNA文库中筛选阳性信号,获得了花发育相关蛋白基因。初步证实CCRI36花发育期均一化全长cDNA文库构建成功,为深入研究棉花花发育机理及发掘与早熟相关的功能基因奠定了基础。展开更多
利用SMART（switching mechanism at 5’end of the RNA transcript）技术构建了红肉猕猴桃品种‘红阳’（Actinidia chinesis cv‘Hongyang’）内果皮组织的全长cDNA文库，此文库的构建有助于克隆与次生代谢相关的基因，特别是红肉猕...利用SMART（switching mechanism at 5’end of the RNA transcript）技术构建了红肉猕猴桃品种‘红阳’（Actinidia chinesis cv‘Hongyang’）内果皮组织的全长cDNA文库，此文库的构建有助于克隆与次生代谢相关的基因，特别是红肉猕猴桃花青素特异合成代谢的基因。文库滴度为6．7×10^4cfu／mL，库容为2．72×10^8cfu／mL，文库重组率99．8％，插入片段多数分布在700～1000bp。随机挑选1014个克隆进行测序，测序成功963个，经过序列拼接去除低质量序列后获得632个unigenes，包括92个contigs和540个singletons，获得已知功能unigenes共441个。从所测克隆中得到一个花青素途径的结构基因AcF3H，其cDNA序列长1369bp（GenBank登录号：FJ542819），CDS区为1101bp，编码366个氨基酸的多肽。与拟南芥、葡萄及龙胆已知乃日氨基酸序列比对，发现该基因十分保守。通过RT—PCR技术对苍溪栽培的不同发育时期‘红阳’猕猴桃果实AcF3H基因的表达进行了分析。结果表明，果肉转色前AcF3H基因表达量较高，而转色初期表达量降低，此后随着果实着色加深表达量维持在较高水平。展开更多
基金Supported by the National Nature Science Foundation of China(31372088)the "Academic Backbone" Project of Northeast Agricultural University(15XG05)China Agriculture Research System(CARS-26-02)
文摘A specialized test of two-hybrid library type three-frame cDNA yeast for Muskmelon Fusarium oxysporum using the switching mechanism at the 5'end of RNA template(SMART)technology was constructed to screen for interaction protein genes for wilt disease and to further research the molecular mechanisms of Fusarium oxysporum pathogenesis to explain the interactions between plant and pathogen.A 500-bp cDNA was purified and extracted using SMART and LD-PCR technology to synthesize ds cDNA and was then homogenized and purified to remove the fragments.After processing,the ds cDNA was connected to three types of reading frame pGADT7-SfiI carriers,and the three connection products in E.coli Electrocell were used to build the primary cDNA library.The titer of three ORF cDNA primary library storage capacities was 2.6×10^6,1.8×10^6 and 3×10^6 cfu;the PCR identification of the ORF 1 and 2 gene recombination rate was 94%,the ORF 3 gene recombination rate was 100%,and the insert length distribution was 0.5-4.0 kb as a single band.To reach the quality requirements for library construction,three kinds of reading frame cDNA primary libraries were mixed and amplified,and the plasmid was transformed into the Y187 yeast strain.The titer of the Y187 yeast library was determined to be 3.5×107 cfu?mL-1,and the base of the yeast library was approximately 1 600 000 cfu.The results showed that the construction of muskmelon Fusarium-specific two-hybrid library type three-frame cDNA yeast had a higher reservoir capacity and recombination rate and met the yeast two-hybrid screening requirements.
文摘【目的】深入探究麦根腐平脐蠕孢(Bipolaris sorokiniana)生长发育及致病力的分子作用机制,并鉴定BsTup1的互作蛋白。【方法】利用麦根腐平脐蠕孢(B.sorokiniana)孢子和不同时期的菌丝体为材料,构建酵母双杂交cDNA文库,以BsTup1基因为诱饵来筛选酵母双杂交文库,确定与BsTup1相互作用的蛋白。【结果】1)利用SMART(switching mechanism at 5′end of the RNA transcript)技术首次成功构建了麦根腐平脐蠕孢(B.sorokini-ana)分生孢子和菌丝体的混合cDNA文库。文库鉴定结果表明,构建的cDNA文库库容为4.8×10^(7) cfu·mL^(-1),文库插入片段重组率达100%且平均大小为1000 bp。2)构建了pGBKT7-BsTup1诱饵载体,无自激活活性。3)使用诱饵蛋白载体pGBKT7-BsTup1对麦根腐平脐蠕孢(B.sorokiniana)酵母双杂交cDNA文库进行筛选,经测序、序列比对和酵母回转验证,获得38个与BsTup1相互作用的候选蛋白。【结论】成功构建了麦根腐平脐蠕孢(B.sorokiniana)的cDNA文库,并鉴定出38个与BsTup1相互作用的候选蛋白。
文摘以短季棉中棉所36(CCRI 36)顶端分生组织和花蕾为材料,以DSN(duplex-specific nuclease)均一化技术与SMART(switching mechanism at 5′end of RNAtranscript)建库技术相结合,构建CCRI 36花发育期均一化全长cDNA文库。经检测原始文库滴度为1.7×106cfumL-1。随机挑取100个克隆,利用PCR方法测得文库重组率达100%,插入片段平均长度为1.2kb。以两个高丰度表达基因Histon3和UBQ7为探针,进行虚拟Northern blot检测显示,其丰度在均一化cDNA中均明显降低,说明均一化效果显著,为节约筛库成本和EST有效测序奠定了基础;同时,利用常规PCR扩增技术从cDNA文库中筛选阳性信号,获得了花发育相关蛋白基因。初步证实CCRI36花发育期均一化全长cDNA文库构建成功,为深入研究棉花花发育机理及发掘与早熟相关的功能基因奠定了基础。
文摘利用SMART（switching mechanism at 5’end of the RNA transcript）技术构建了红肉猕猴桃品种‘红阳’（Actinidia chinesis cv‘Hongyang’）内果皮组织的全长cDNA文库，此文库的构建有助于克隆与次生代谢相关的基因，特别是红肉猕猴桃花青素特异合成代谢的基因。文库滴度为6．7×10^4cfu／mL，库容为2．72×10^8cfu／mL，文库重组率99．8％，插入片段多数分布在700～1000bp。随机挑选1014个克隆进行测序，测序成功963个，经过序列拼接去除低质量序列后获得632个unigenes，包括92个contigs和540个singletons，获得已知功能unigenes共441个。从所测克隆中得到一个花青素途径的结构基因AcF3H，其cDNA序列长1369bp（GenBank登录号：FJ542819），CDS区为1101bp，编码366个氨基酸的多肽。与拟南芥、葡萄及龙胆已知乃日氨基酸序列比对，发现该基因十分保守。通过RT—PCR技术对苍溪栽培的不同发育时期‘红阳’猕猴桃果实AcF3H基因的表达进行了分析。结果表明，果肉转色前AcF3H基因表达量较高，而转色初期表达量降低，此后随着果实着色加深表达量维持在较高水平。
