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Low-complexity PTS scheme based on phase factor sequences optimization 被引量:2
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作者 JI Ce ZHANG Chao ZHU Wenjing 《Journal of Systems Engineering and Electronics》 SCIE EI CSCD 2018年第4期707-713,共7页
In this paper, a new partial transmit sequence(PTS)scheme with low computational complexity is proposed for the problems of high computational complexity in the conventional PTS method. By analyzing the relationship... In this paper, a new partial transmit sequence(PTS)scheme with low computational complexity is proposed for the problems of high computational complexity in the conventional PTS method. By analyzing the relationship of candidate sequences in the PTS method under the interleaved partition method, it has been discovered that some candidate sequences generated by phase factor sequences have the same peak average power ratio(PAPR). Hence, phase factor sequences can be optimized to reduce their searching times. Then, the computational process of generating candidate sequences can be simplified by improving the utilization of data and minimizing the calculations of complex multiplication. The performance analysis shows that, compared with the conventional PTS scheme, the proposed approach significantly decreases the computational complexity and has no loss of PAPR performance. 展开更多
关键词 partial transmit sequence (PTS) peak average powerratio (PAPR) phase factor sequences optimization orthogonal frequency division multiplexing (OFDM) low computational com-plexity
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Pseudo-Random Sequences Generator Based on Discrete Hyperchaotic Systems 被引量:1
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作者 Li Changgang & Han Zhengzhi Department of Automation, Shanghai Jiaotong University, Shanghai 200030, P. R. China 《Journal of Systems Engineering and Electronics》 SCIE EI CSCD 2003年第4期84-89,共6页
We first design a discrete hyperchaotic system via piece-wise linear state feedback. The states of the closed loop system are locally expanding in two directions but absolutely bounded on the whole, which implies hype... We first design a discrete hyperchaotic system via piece-wise linear state feedback. The states of the closed loop system are locally expanding in two directions but absolutely bounded on the whole, which implies hyperchaos. Then, we use three suchlike hyperchaotic systems with different feedback gain matrices to design a pseudo-random sequence generator (PRSG). Through a threshold function, three sub-sequences generated from the output of piecewise linear functions are changed into 0-1 sequences. Then, followed by XOR operation, an unpredictable pseudo-random sequence (PRS) is ultimately obtained. The analysis and simulation results indicate that the PRS, generated with hyperchaotic systems, has desirable statistical features. 展开更多
关键词 discrete hyperchaotic system piecewise linear state feedback pseudo-random sequences.
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DEPOSITIONAL SEQUENCES AROUND J/K BOUNDARY IN THE QOMOLONGMA AREA, SOUTH TIBET
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作者 Shi Xiaoying 1, Nicol Morton 2(1 China University of Geosciences, Beijing 100083,China 2.University of London, London WC1E 7HX,UK) 《地学前缘》 EI CAS CSCD 2000年第S1期21-22,共2页
The uppermost Jurassic to Lower Cretaceous in the Qomolongma (Mt. Everest) area were deposited in a strong subsiding setting on passive continental margin. From Tithonian to Valanginian, the area experienced an enviro... The uppermost Jurassic to Lower Cretaceous in the Qomolongma (Mt. Everest) area were deposited in a strong subsiding setting on passive continental margin. From Tithonian to Valanginian, the area experienced an environment shift from circum\|shelf margin carbonate platform to foreslope, then to deep continental slope [1] . Correspondingly, the sediments change in vertical succession from quartz sandstone, via carbonate grainstone to dark shale intercalated with lithic sandstone of gravity flow. From the Tithonian to Valanginian, eight 3rd\|order sequences have been recognized [1] with clearly delineated sequence boundaries and reasonable biostratigraphic controls of ammonites. From the angle of sequence stratigraphy and sedimentary cycles, the important change happened at ca. 138Ma [2] of the Lower Tithonian (about 120m above Aulacosphinctoides hybonotum zone), where a waved subaerial erosion surface occurs in massive bioclastic grainstone. The boundary at ca. 134 5Ma (latest Tithonian, about 60m below the FAD of \%Berriasella cf. jacobi [3] ) comes to the next. The third one is at ca 132Ma (some 170m above the FAD of Berriasella cf. jacobi [3] , but about 60m below the FAD of Berriasella cf. grandis [3] ). In terms of sea\|level change, the sequence boundary at 134 5Ma is probably the most distinctive one, above which some 60m gravel\|bearing massive medium\|grained quartz sandstone was laid down and obviously truncates the underlying strata. In the dark shale below the sandstone, abundant in ammonites, such as Virgatosphinctes, Aulacosphinctes, Haplophylloceras and Gymnosphinctes are recorded [3] . The quartz sandstone itself does not bear identifiable fossils. Above the quartz sandstone, the strata mainly consists of dark silty shale up to 180m thick, with an prominent marine transgression at the base. Just above the first flooding surface (FFS), quite a number of ammonites such as \%Berriasella\% cf. \%jacobi, Blanofordiceras, Hymalayaites\% and \%Pseudosubplanites \%are documented [3] . The third sequence, which is delineated by submarine truncation of slope fan complexes at bottom, is also characterized by dark shale and silts, yielding ammonites \%Berriasella \%cf. \%grandis\% and B. cf. \%berthei.\%>From the viewpoint of sequence stratigraphy, we herein suggest to take the FFS in the second sequence as the J/K boundary. The sequence boundary below it can be used as a nice auxiliary marker, which represents a large sea\|level fall, and can be correlated widely in the world. From the angle of paleontology, the FFS is also ideal for the boundary, where the most important faunal turnover happened. Theoretically, taking FFS as a chronostratigraphic boundary has more advantages than using sequence boundary. 展开更多
关键词 J/K BOUNDARY DEPOSITIONAL sequences SOUTH TIBET
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Optimal training sequences for MIMO systems under correlated fading
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作者 Pang Jiyong Li Jiandong Lu Zhuo Zhao Linjing Chen Liang 《Journal of Systems Engineering and Electronics》 SCIE EI CSCD 2008年第1期33-38,共6页
The optimal design of training sequences for channel estimation in multiple-input multiple-output (MIMO) systems under spatially correlated fading is considered. The channel is assumed to be a block-fading model wit... The optimal design of training sequences for channel estimation in multiple-input multiple-output (MIMO) systems under spatially correlated fading is considered. The channel is assumed to be a block-fading model with spatial correlation known at both the transmitter and the receiver. To minimize the channel estimation error, optimal training sequences are designed to exploit full information of the spatial correlation under the criterion of minimum mean square error (MMSE). It is investigated that the spatial correlation is helpful to decrease the estimation error and the proposed training sequences have good performance via simulations. 展开更多
关键词 MIMO channel estimation training sequences spatial correlation minimum mean square error
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Dim Moving Small Target Detection by Local and Global Variance Filtering on Temporal Profiles in Infrared Sequences
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作者 Chen Hao Liu Delian 《航空兵器》 CSCD 北大核心 2019年第6期43-49,共7页
In this paper, the temporal different characteristics between the target and background pixels are used to detect dim moving targets in the slow-evolving complex background. A local and global variance filter on tempo... In this paper, the temporal different characteristics between the target and background pixels are used to detect dim moving targets in the slow-evolving complex background. A local and global variance filter on temporal profiles is presented that addresses the temporal characteristics of the target and background pixels to eliminate the large variation of background temporal profiles. Firstly, the temporal behaviors of different types of image pixels of practical infrared scenes are analyzed.Then, the new local and global variance filter is proposed. The baseline of the fluctuation level of background temporal profiles is obtained by using the local and global variance filter. The height of the target pulse signal is extracted by subtracting the baseline from the original temporal profiles. Finally, a new target detection criterion is designed. The proposed method is applied to detect dim and small targets in practical infrared sequence images. The experimental results show that the proposed algorithm has good detection performance for dim moving small targets in the complex background. 展开更多
关键词 small target detection infrared image sequences complex background temporal profile variance filtering
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Global Annotation of Small RNA and MicroRNA Mature Sequences from Developing Ovules of Gossypium hirsutum L.
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作者 ABDURAKHMONOV Ibrokhim Y DEVOR Eric J BURIEV Zabardast T MAKAMOV Abdusalom SHERMATOV Shukhrat E ABDUKARIMOV Abdusattor 《棉花学报》 CSCD 北大核心 2008年第S1期11-,共1页
The involvement of small RNAs in cotton fiber development is under explored.The objective of this work was to directly clone,annotate,and analyze small RNAs of developing ovules to reveal
关键词 Global Annotation of Small RNA and MicroRNA Mature sequences from Developing Ovules of Gossypium hirsutum L RNA
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Almost perfect sequences based on cyclic difference sets 被引量:6
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作者 Chen Gang Zhao Zhengyu 《Journal of Systems Engineering and Electronics》 SCIE EI CSCD 2007年第1期155-159,共5页
The perfect sequences are so ideal that all out-of-phase autocorrelation coefficients are zero, and if the sequences are used as the coding modulating signal for the phase-modulated radar, there will be no interferenc... The perfect sequences are so ideal that all out-of-phase autocorrelation coefficients are zero, and if the sequences are used as the coding modulating signal for the phase-modulated radar, there will be no interference of side lobes theoretically. However, it has been proved that there are no binary perfect sequences of period 4 〈 n ≤ 12100. Hence, the almost perfect sequences with all out-of-phase autocorrelation coefficients as zero except one are of great practice in engineering. Currently, the cyclic difference set is one of most effective tools to analyze the binary sequences with perfect periodic autocorrelation function. In this article, two characteristic formulas corresponding to the autocorrelation and symmetric structure of almost perfect sequences are calculated respectively. All almost perfect sequences with period n, which is a multiple of 4, can be figured out by the two formulas. Several almost perfect sequences with different periods have been hunted by the program based on the two formulas and then applied to the simulation program and practical application for ionospheric sounding. 展开更多
关键词 Perfect sequence Almost perfect sequence Cyclic difference sets Autocorrelation coefficients Side lobes Ionospheric sounding
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Linear complexity and autocorrelation of a new class of binary generalized cyclotomic sequences of order two and length pqr 被引量:1
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作者 JIA Wenjuan GAO Juntao ZHANG Peng 《Journal of Systems Engineering and Electronics》 SCIE EI CSCD 2019年第4期651-661,共11页
Cyclotomic sequences have good cryptographic properties and are closely related to difference sets.This paper proposes a new class of binary generalized cyclotomic sequences of order two and length pqr.Its linear comp... Cyclotomic sequences have good cryptographic properties and are closely related to difference sets.This paper proposes a new class of binary generalized cyclotomic sequences of order two and length pqr.Its linear complexity,minimal polynomial,and autocorrelation are investigated.The results show that these sequences have a large linear complexity when 2∈D1,which means they can resist the Berlekamp-Massey attack.Furthermore,the autocorrelation values are close to 0 with a probability of approximately 1?1/r.Therefore,when r is a big prime,the new sequence has a good autocorrelation. 展开更多
关键词 GENERALIZED cyclotomic sequence linear complexity MINIMAL POLYNOMIAL AUTOCORRELATION value.
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基于改进Seq2Seq的船舶轨迹预测模型
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作者 唐家乐 段兴锋 姚鹏 《上海海事大学学报》 北大核心 2025年第2期18-22,共5页
针对传统循环神经网络(recurrent neural network,RNN)模型收敛速度慢、精度低,导致海上船舶预测轨迹与真实轨迹之间差别较大的问题,构建由RNN组成的Seq2Seq(sequence to sequence)模型。引入注意力机制和卷积神经网络(convolutional ne... 针对传统循环神经网络(recurrent neural network,RNN)模型收敛速度慢、精度低,导致海上船舶预测轨迹与真实轨迹之间差别较大的问题,构建由RNN组成的Seq2Seq(sequence to sequence)模型。引入注意力机制和卷积神经网络(convolutional neural network,CNN)对模型进行改进,加强对数据特征的提取能力,加快模型收敛速度并提高轨迹预测精度。实验结果显示:与传统RNN模型相比,Seq2Seq模型的均方误差、均方根误差和平均绝对误差分别降低81.41%、12.67%和62.43%;与Seq2Seq模型相比,改进Seq2Seq模型的均方误差、均方根误差和平均绝对误差分别降低42.87%、69.27%和45.79%。 展开更多
关键词 船舶轨迹预测 Seq2Seq(sequence to sequence) 注意力机制 卷积神经网络(CNN) 循环神经网络(RNN)
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Five novel ZNF469 gene mutations in sporadic keratoconus patients in the Han Chinese population
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作者 CAO Yanna DENG Zhihong +3 位作者 HE Guiyun XIAO Li ZHANG Feng SU Feng 《中南大学学报(医学版)》 北大核心 2025年第6期931-939,共9页
Objective:Keratoconus(KC)is a progressive corneal ectasia disorder,arising from a myriad of causes including genetic predispositions,environmental factors,biomechanical influences,and inflammatory reactions.This study... Objective:Keratoconus(KC)is a progressive corneal ectasia disorder,arising from a myriad of causes including genetic predispositions,environmental factors,biomechanical influences,and inflammatory reactions.This study aims to identify potential pathogenetic gene mutations in patients with sporadic KC in the Han Chinese population.Methods:Twenty-five patients with primary KC as well as 50 unrelated population matched healthy controls,were included in this study to identify potential pathogenic gene mutations among sporadic KC patients in the Han Chinese population.Sanger sequencing and whole-exome sequencing(WES)were used to analyze mutations in the zinc finger protein 469(ZNF469)gene.Bioinformatics analysis was conducted to explore the potential role of ZNF469 in KC pathogenesis.Results:Five novel heterozygous missense variants were identified in KC patients.Among them,2 compound heterozygous variants,c.8986G>C(p.E2996Q)with c.11765A>C(p.D3922A),and c.4423C>G(p.L1475V)with c.10633G>A(p.G3545R),were determined to be possible pathogenic factors for KC.Conclusion:Mutations in the ZNF469 gene may contribute to the development of KC in the Han Chinese population.These mutation sites may provide valuable information for future genetic screening of KC patients and their families. 展开更多
关键词 KERATOCONUS ZNF469 gene MUTATION Sanger sequencing Han Chinese population
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Regulatory effects of seed soaking with a beneficial microbial agent on the rhizosphere soil microflora of edible lilies
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作者 MAN Hua-li LI Hui +3 位作者 SHI Gui-hong YANG Hong-yu LI Mou-qiang SHI Gui-ying 《植物营养与肥料学报》 北大核心 2025年第5期994-1005,共12页
【Background】The application of beneficial-microbial seed soaking prior to sowing represents a novel technology that has not been employed in Lanzhou lily cultivation.We conducted an experiment to explore the impact ... 【Background】The application of beneficial-microbial seed soaking prior to sowing represents a novel technology that has not been employed in Lanzhou lily cultivation.We conducted an experiment to explore the impact of this soaking method on the fungal and bacterial community structures using next-generation sequencing technology(NGS).【Methods】Lily bulbs were soaked in a seed treating agent containing beneficial microbes(SP treatment)for 4 hours.Subsequently,they were planted in soil in July and sampled in September to assess plant growth,rhizosphere soil physicochemical properties,and microorganism community structures.In addition,we employed the software PICRUSt and FUNGuild to predict bacterial pathways and fungal functions.【Results】Under SP treatment,there were significant alterations in fungi and bacteria community structures,accompanied by improved soil nutrient status.Notably,the relative abundance of dominant microorganism groups,such as the fungi Basidiomycota,Pseudeurotium,Cladophialophora,Microascus,and Dactylonectria,as well as the bacteria Proteobacteria,Chloroflexi,Ochrobactrium,Lysobacter,and RB41,underwent notable changes.Microorganism function prediction results indicated a reduction in pathotrophic fungi(including plant pathogens)and an increase in endophytic and saprotrophic fungi under SP treatment.Among the top 20 metabolism pathways,80%were upregulated in SP treatment compared to the CK.【Conclusions】Seed soaking with beneficial microbial strain promotes the growth of Lanzhou lily bulbs.The beneficial microorganisms play a crucial role in regulating soil microbial structures,enhancing the accumulation of endophytic fungi,reducing the abundance of pathogens,and improving soil functions.Furthermore,specific microbial groups are found to be involved in maintaining soil health. 展开更多
关键词 edible lily second-generation sequencing technology(NGS) seed treating fungal community structure bacterial community structure PROPHYLAXIS
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Research on the navigation method of high speed differential rotation guided ammunition with ballistic assistance prediction under GNSS denial
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作者 Ning Liu Kejun Hu +5 位作者 Bin Hu Haorui Li Kai Shen Wenhao Qi Junfang Fan Zhong Su 《Defence Technology(防务技术)》 2025年第7期275-289,共15页
In complex environments such as high dynamics and weak signals,a satellite signal compensation method based on prefabricated trajectory assistance and an improved adaptive Kalman filter is proposed for a 155 mm differ... In complex environments such as high dynamics and weak signals,a satellite signal compensation method based on prefabricated trajectory assistance and an improved adaptive Kalman filter is proposed for a 155 mm differential rotating rear-body control-guided projectile to address the situation of satellite signal flickering and loss in projectile navigation systems due to environmental limitations.First,establish the system state and measurement equation when receiving satellite signals normally.Second,a seven-degree-of-freedom external ballistic model is constructed,and the ideal trajectory output from the ballistic model is used to provide the virtual motion state of the projectile,which is input into a filter as a substitute observation when satellite signals are lost.Finally,an adaptive Kalman filter(AKF)is designed,the proposed adaptive Kalman filter can accurately adjust the estimation error covariance matrix and Kalman gain in real-time based on information covariance mismatch.The simulation results show that compared to the classical Kalman filter,it can reduce the average positioning error by more than 38.21%in the case of short-term and full-range loss of satellite signals,providing a new idea for the integrated navigation of projectiles with incomplete information under the condition of satellite signal loss. 展开更多
关键词 GNSS refusal Ballistic assistance Guided ammunition Adaptive kalman filter Covariance of innovation sequence
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基于SSR分子标记的新疆83个常规陆地棉品种亲缘关系分析
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作者 牛清东 杨延龙 《中国棉花》 2025年第7期32-37,共6页
采用简单重复序列(simple repeated sequence,SSR)分子标记技术对2022―2024年新疆种业公司提交的83份样品(包括早熟品种、早中熟品种)进行亲缘关系分析,以期为棉花品种的管理和选择提供依据。使用农作物SSR数据比对软件(登记号:2025SR0... 采用简单重复序列(simple repeated sequence,SSR)分子标记技术对2022―2024年新疆种业公司提交的83份样品(包括早熟品种、早中熟品种)进行亲缘关系分析,以期为棉花品种的管理和选择提供依据。使用农作物SSR数据比对软件(登记号:2025SR0343132)对样品SSR数据位点进行两两比较,分别利用Powermarker V3.25、NTSYSpc-2.10e、Structure 2.3.4、GenALEx 6.502进行SSR多态性分析、亲缘关系分析、群体结构分析和主成分分析。结果表明,60对SSR引物共扩增出153个等位变异,平均等位变异数为2.55,平均多态性信息含量为0.32。83份品种两两比较共产生了3403个组合,差异位点范围为0~47,位点差异大于2的组合有3290个,占组合数的96.7%。亲缘关系分析、群体结构分析和主坐标分析的分类结果基本一致,83份样品被划分为2个群体pop1和pop2,pop2包含pop2A和pop2B亚群。亲缘关系分析显示,棉种样品间的相似系数在0.503~1.000,平均值为0.690,说明棉种样品间遗传背景较窄、亲缘关系较近。主坐标分析结果显示:pop1共有样品15份,均为早熟品种;pop2A共有样品52份,其中含早熟品种29份、早中熟品种23份;pop2B共有样品16份,其中有早熟品种9份、早中熟品种7份,并没有明显的地理分类特征。这些结果可为新疆棉花品种选育和管理提供参考。 展开更多
关键词 陆地棉 简单重复序列(simple repeated sequence SSR) 分子标记 亲缘关系 近似品种 群体结构分析 主成分分析 多态性
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改进灰狼算法优化GBDT在PM_(2.5)预测中的应用 被引量:11
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作者 江雨燕 傅杰 +2 位作者 甘如美江 孙雨辰 王付宇 《安全与环境学报》 CAS CSCD 北大核心 2024年第4期1569-1580,共12页
针对灰狼算法易陷入局部最优解和全局搜索能力不足的问题,通过霍尔顿序列(Halton Sequence)搜索算法初始化狼群位置,避免灰狼算法陷入局部最优解和重复运算;引入莱维飞行和随机游动策略对灰狼算法的寻优过程进行优化,以增加算法的全局... 针对灰狼算法易陷入局部最优解和全局搜索能力不足的问题,通过霍尔顿序列(Halton Sequence)搜索算法初始化狼群位置,避免灰狼算法陷入局部最优解和重复运算;引入莱维飞行和随机游动策略对灰狼算法的寻优过程进行优化,以增加算法的全局搜索能力;利用粒子群算法模拟灰狼种群得出的最佳适应度以用于惩罚项改进灰狼算法中的头狼更新策略。使用改进算法优化的梯度提升树(Gradient Boosting Decision Trees,GBDT)模型对北京市大气污染物监测数据中PM_(2.5)质量浓度进行预测,采用3种评估函数对各模型以及混合模型预测效果得分进行评估。结果显示,本文改进的灰狼算法对梯度提升树的优化效果优于其他算法,均方根误差E RMS为6.65μg/m^(3),平均绝对值误差E MA为3.20μg/m^(3),拟合优度(R^(2))为99%,比传统灰狼算法优化结果的均方根误差减少了19.19μg/m^(3),平均绝对值误差降低了10.03μg/m^(3),拟合优度增加了9百分点;与霍尔顿序列和莱维飞行改进的(Levy Flight-Halton Sequence,LHGWO)相比,改进的灰狼算法预测得分的均方根误差降低了10.39μg/m^(3),平均绝对值误差减小了6.71μg/m^(3),拟合优度提高了5百分点。研究表明了预测模型优化的有效性,为未来城市改善空气质量提供了科学依据和技术支持。 展开更多
关键词 环境学 PM_(2.5)质量浓度预测 改进灰狼算法(GWO) 梯度提升树算法(GBDT) 莱维(Levy)飞行 霍尔顿序列(Halton Sequence) 粒子群算法(PSO)
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基于改进狼群算法优化LSTM网络的舆情演化预测 被引量:3
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作者 李若晨 肖人彬 《复杂系统与复杂性科学》 CAS CSCD 北大核心 2024年第1期1-11,共11页
为提高预测舆情演化趋势的能力,提出了一种基于改进狼群算法(IWPA)优化长短期记忆(LSTM)神经网络的舆情演化预测模型。采用Halton Sequence进行初始化,提高种群多样性;设计步长因子进行高斯-正弦扰动变换,提高狼群探索开发能力;结合鲸... 为提高预测舆情演化趋势的能力,提出了一种基于改进狼群算法(IWPA)优化长短期记忆(LSTM)神经网络的舆情演化预测模型。采用Halton Sequence进行初始化,提高种群多样性;设计步长因子进行高斯-正弦扰动变换,提高狼群探索开发能力;结合鲸鱼优化算法中的螺旋改进围攻机制,增强狼群的局部搜索能力;引入记忆力机制,使用双向记忆种群增加狼群协同合作能力,将改进后的狼群算法应用到LSTM神经网络的超参数预测。采用“新冠疫情”和“食品安全”等关键词作为实例,证明了IWPA-LSTM神经网络舆情演化预测模型具有良好的准确性和普适性,适用于多种舆情演化的预测。 展开更多
关键词 舆情演化预测 狼群算法 LSTM神经网络 Halton Sequence 正弦扰动 鲸鱼螺旋围攻机制 记忆力机制
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Single‑cell RNA sequencing opens a new era for cotton genomic research and gene functional analysis 被引量:1
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作者 PAN Xiaoping PENG Renhai ZHANG Baohong 《Journal of Cotton Research》 CAS 2024年第2期215-218,共4页
Single-cell RNA sequencing(scRNA-seq)is one of the most advanced sequencing technologies for studying transcriptome landscape at the single-cell revolution.It provides numerous advantages over traditional RNA-seq.Sinc... Single-cell RNA sequencing(scRNA-seq)is one of the most advanced sequencing technologies for studying transcriptome landscape at the single-cell revolution.It provides numerous advantages over traditional RNA-seq.Since it was first used to profile single-cell transcriptome in plants in 2019,it has been extensively employed to perform different research in plants.Recently,scRNA-seq was also quickly adopted by the cotton research community to solve lots of scientific questions which have been never solved.In this comment,we highlighted the significant progress in employing scRNA-seq to cotton genetic and genomic study and its future potential applications. 展开更多
关键词 COTTON Single-cell RNA sequencing TRANSCRIPTOME
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基于SCAR标记和DNA条形码技术的苍术基原鉴别研究
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作者 陈研 冯露露 +1 位作者 黄荣 齐伟辰 《世界科学技术-中医药现代化》 CSCD 北大核心 2024年第2期490-501,共12页
目的开发出能同时鉴别北苍术和关苍术的分子标记方法,并探究不同种质资源苍术的遗传进化关系。方法对不同地区北苍术Atractylodes chinensis(Bunge)Koidz及关苍术A.japonica Koidz.ex Kitam基因组DNA的差异片段进行测序,结合SRAP、ISSR... 目的开发出能同时鉴别北苍术和关苍术的分子标记方法,并探究不同种质资源苍术的遗传进化关系。方法对不同地区北苍术Atractylodes chinensis(Bunge)Koidz及关苍术A.japonica Koidz.ex Kitam基因组DNA的差异片段进行测序,结合SRAP、ISSR、DAMD分子标记方法,优化PCR反应体系,筛选并转换成特异性标记,同时,采用条形码方法分析种间序列差异。结果通过SRAP、ISSR、DAMD三种分子标记方法的PCR扩增,共筛选出198对能稳定扩增且重现性好的引物,转换出7对能稳定、快速鉴别北苍术和关苍术的SCAR引物。条形码方法检测出北苍术ITS2序列长度为454 bp,关苍术ITS2序列长度为453 bp,与其他苍术属植物之间遗传距离较远。NJ树结果显示,北苍术、关苍术及其他苍术属植物均各自聚为一支,表现出良好的单系性。依据ITS2二级结构,4种苍术属植物在螺旋区的茎环数目、大小、位置均有明显差异,可以直观地进行区分。结论所开发的特异性SCAR标记为苍术属植物优良品种的筛选提供了新方法,DNA条形码能稳定、准确鉴别北苍术。 展开更多
关键词 北苍术 关苍术 Internal transcribed spacer 2(ITS2) Sequence-related amplified polymorphism(SRAP) Inter-simple sequence repeat(ISSR) Direct amplification of minisatellite region DNA(DAMD) Sequence characterized amplified regions(SCAR)
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Variations of phyllosphere microorganisms in asymptomatic and tobacco brown spot leaves before and after spraying 12% difenoconazole + fluxapyroxad SC
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作者 LI Tong WANG Hancheng +6 位作者 YE Guo WANG Qing NGANGUEM NZALLE Yranney Brice WANG Feng CAI Liuti FENG Ruichao ZHANG Songbai 《农药学学报》 CAS CSCD 北大核心 2024年第5期932-948,共17页
12%difenoconazole+fluxapyroxad SC(commercial name:Jiangong)was first released by BASF in China in 2016.It has been registered to control many diseases,including pear scab,apple Alternaria leaf spot,tomato early blight... 12%difenoconazole+fluxapyroxad SC(commercial name:Jiangong)was first released by BASF in China in 2016.It has been registered to control many diseases,including pear scab,apple Alternaria leaf spot,tomato early blight,cucumber powdery mildew,etc.This study evaluated the bioactivity of Jiangong against Alternaria alternata and explored variations of phyllosphere microorganisms in both asymptomatic and tobacco brown spot leaves at different persistence periods(0,5,10,and 15 days post-fungicide application)using high-throughput sequencing technology.The results indicated that Jiangong effectively inhibited mycelial growth(average EC_(50) value of 0.51μg/mL),conidia germination(average EC_(50) value of 3.47μg/mL),and the carbon metabolism of A.alternata.Both asymptomatic and symptomatic leaves presented complex microbial communities.Higher fungal diversity was noted in asymptomatic leaves,while higher bacterial diversity was found in symptomatic leaves.After application,the diversity and abundance of microbial community structures in both types of leaves changed over time.Fungal microbiome communities showed greater sensitivity than bacterial groups,with the microbiome communities of asymptomatic leaves being more affected than those of symptomatic leaves.Fungal community diversity decreased for both symptomatic and asymptomatic leaves after 5 days of application,while the diversity of fungal community in symptomatic leaves showed an upward trend after 10 days of application.Meanwhile,bacterial community diversity increased in both symptomatic and asymptomatic leaves after 5 days of application but then declined in asymptomatic leaves after 15 days.The abundance of the dominant function group of phyllosphere bacteria(metabolism,genetic information processing,environmental information processing)was not affected by the application of Jiangong.However,the abundance of the dominant function group of phyllosphere fungi(animal pathogen-endophyte-wood saprotroph,endophyte-plant pathogen,plant pathogen-undefined saprotroph)was significantly affected by the application of Jiangong,and high variation was found in symptomatic leaves than that of asymptomatic leaves.The application of Jiangong-induced alterations in the community structure of the tobacco phyllosphere microbiome provides a basis for future tobacco brown spot control strategies based on phyllospheric microecology. 展开更多
关键词 tobacco brown spot DIFENOCONAZOLE fluxapyroxad microorganism communities diversity high-throughput sequencing
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From Phenotypes to Molecules: Revolutionizing Gut Microbiota Identification Methods
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作者 WANG Xuan LV Chang-Long ZHAI Jing-Bo 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2024年第8期1065-1077,共13页
The gut microbiota is a complex ecosystem composed of many bacteria and their metabolites.It plays an irreplaceable role in human digestion,nutrient absorption,energy supply,fat metabolism,immune regulation,and many o... The gut microbiota is a complex ecosystem composed of many bacteria and their metabolites.It plays an irreplaceable role in human digestion,nutrient absorption,energy supply,fat metabolism,immune regulation,and many other aspects.Exploring the structure and function of the gut microbiota,as well as their key genes and metabolites,will enable the early diagnosis and auxiliary diagnosis of diseases,new treatment methods,better effects of drug treatments,and better guidance in the use of antibiotics.The identification of gut microbiota plays an important role in clinical diagnosis and treatment,as well as in drug research and development.Therefore,it is necessary to conduct a comprehensive review of this rapidly evolving topic.Traditional identification methods cannot comprehensively capture the diversity of gut microbiota.Currently,with the rapid development of molecular biology,the classification and identification methods for gut microbiota have evolved from the initial phenotypic and chemical identification to identification at the molecular level.This review integrates the main methods of gut microbiota identification and evaluates their application.We pay special attention to the research progress on molecular biological methods and focus on the application of high-throughput sequencing technology in the identification of gut microbiota.This revolutionary method for intestinal flora identification heralds a new chapter in our understanding of the microbial world. 展开更多
关键词 gut microbiota 16S rRNA real-time fluorescent qPCR high-throughput sequencing mass spectrum
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Alectinib treatment for 2 non-small cell lung carcinoma patients carrying different novel ALK fusions
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作者 LIANG Qingchun LI Namei LI Xiaohong 《中南大学学报(医学版)》 CAS CSCD 北大核心 2024年第7期1164-1172,共9页
The genomic fusions of the anaplastic lymphoma kinase(ALK)gene have been widely recognized as effective therapeutic targets for non-small cell lung carcinoma(NSCLC).The Second Xiangya Hospital of Central South Univers... The genomic fusions of the anaplastic lymphoma kinase(ALK)gene have been widely recognized as effective therapeutic targets for non-small cell lung carcinoma(NSCLC).The Second Xiangya Hospital of Central South University has treated 2 NSCLC patients with 2 distinct novel ALK gene fusions.Case 1 was a 55-year-old male with a solid nodule located in the right hilar lobe on enhanced CT scan.Case 2 was a 47-year-old female with enhanced CT showing involvement of the left upper lobe of lung.Histopathological examination of tumor tissues confirmed lung adenocarcinoma in both cases.Immunohistochemical(IHC)staining demonstrated positivity for thyroid transcription factor 1(TTF-1)and ALK-D5F3 in tumor cells,while negativity for P40.The next-generation sequencing(NGS)tests identified a PNPT1-ALK(Exon22:Exon20)fusion variant in case 1 and a TCEAL2-ALK(Exon3:Exon19)fusion variant in case 2.The TCEAL2-ALK fusion was further confirmed by amplification refractory mutation system(ARMS)-PCR at the mRNA level.Both patients were treated with oral alectinib at a dosage of 600 mg twice daily.The tumors in both patients were significantly decreased after alectinib treatment,achieving partial response.At the time of submission,there was an absence of disease progression and the progression-free survival(PFS)had surpassed 1 year.It offered compelling evidences that the individuals with NSCLC and harboring either a PNPT1-ALK(Exon22:Exon20)fusion or a TCEAL2-ALK(Exon3:Exon19)fusion,experience favorable therapeutic outcomes through the administration of alectinib.This study expands the known ALK fusion variants database and supports the precision treatment of NSCLC using ALK tyrosine kinase inhibitors(TKIs). 展开更多
关键词 non-small cell lung carcinoma alectinib ALK gene fusion next-generation sequencing
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