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RNA SNP Detection Method With Improved Specificity Based on Dual-competitive-padlock-probe
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作者 ZHANG Qin-Qin LI Jin-Ze +6 位作者 ZHANG Wei LI Chuan-Yu ZHANG Zhi-Qi YAO Jia DU Hong ZHOU Lian-Qun GUO Zhen 《生物化学与生物物理进展》 SCIE CAS CSCD 北大核心 2024年第11期3021-3033,共13页
Objective The detection of RNA single nucleotide polymorphism(SNP)is of great importance due to their association with protein expression related to various diseases and drug responses.At present,splintR ligase-assist... Objective The detection of RNA single nucleotide polymorphism(SNP)is of great importance due to their association with protein expression related to various diseases and drug responses.At present,splintR ligase-assisted methods are important approaches for RNA direct detection,but its specificity will be limited when the fidelity of ligases is not ideal.The aim of this study was to create a method to improve the specificity of splintR ligase for RNA detection.Methods In this study,a dualcompetitive-padlock-probe(DCPLP)assay without the need for additional enzymes or reactions is proposed to improve specificity of splintR ligase ligation.To verify the method,we employed dual competitive padlock probe-mediated rolling circle amplification(DCPLP-RCA)to genotype the CYP2C9 gene.Results The specificity was well improved through the competition and strand displacement of dual padlock probe,with an 83.26%reduction in nonspecific signal.By detecting synthetic RNA samples,the method demonstrated a dynamic detection range of 10 pmol/L-1 nmol/L.Furthermore,clinical samples were applied to the method to evaluate its performance,and the genotyping results were consistent with those obtained using the qPCR method.Conclusion This study has successfully established a highly specific direct RNA SNP detection method,and provided a novel avenue for accurate identification of various types of RNAs. 展开更多
关键词 RNA single nucleotide polymorphism GENOTYPING rolling circle amplification dual padlock probe
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江西萍乡杨家湾2号洞晚更新世野猪化石研究 被引量:1
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作者 孙吉嘉 张贝 +3 位作者 陈曦 邓里 文军 同号文 《古脊椎动物学报(中英文)》 CSCD 北大核心 2021年第1期64-80,共17页
江西萍乡杨家湾2号洞是发育在二叠系灰岩中的溶洞,其中充填了晚更新世的黏土和沙砾堆积;自2015年至今已经挖掘6次,出土了万余件哺乳动物化石标本,其中野猪牙齿化石约占49%,代表目前我国更新世野猪牙齿化石最为丰富的地点。将杨家湾2号... 江西萍乡杨家湾2号洞是发育在二叠系灰岩中的溶洞,其中充填了晚更新世的黏土和沙砾堆积;自2015年至今已经挖掘6次,出土了万余件哺乳动物化石标本,其中野猪牙齿化石约占49%,代表目前我国更新世野猪牙齿化石最为丰富的地点。将杨家湾2号洞出土的猪科动物牙齿化石(尤其是犬齿和第三臼齿)与我国南方特有的化石种裴氏猪(Sus peii)和小猪(Sus xiaozhu)及盐井沟出土的野猪化石进行了牙齿形态学比较研究和一系列数据分析(包括散点图、回归分析、变异系数分析和线性判别分析等);所有雄性下犬齿均属于野猪型,数据分析结果也表明,杨家湾2号洞出土的猪科化石可全部归入野猪种(Sus scrofa);尽管雄性下犬齿和上第二及下第三臼齿测量数据的变异范围很大,但都在野猪的变异范围之内。在此基础上,还利用杨家湾2号洞出土的野猪第三臼齿化石进行了种内变异研究,上、下第三臼齿的散点图各自聚为两大聚集区,这一结果很可能是由性别差异所导致而非不同属种混合。中国南方地区早更新世之后的猪科动物基本只有野猪一种,这与毗邻的东南亚地区不同;东南亚的猪科动物十分多样,并且绝大多数具有爪哇疣猪型犬齿。 展开更多
关键词 江西萍乡杨家湾2号洞 晚更新世 野猪 牙齿 种内变异 性双型
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Female preference promotes asynchronous sex evolution in Elephantiformes 被引量:2
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作者 WANG Shi-Qi DENG Tao 《古脊椎动物学报》 CSCD 北大核心 2016年第1期51-66,共16页
性双型的特征通常被认为产生于种内争夺交配优先权的斗争。例如,现生和化石的雄性长鼻类动物具有较大的体型和较粗壮的上门齿。本研究阐释了如下现象:化石象型类动物(Elephantiformes,长鼻类的主要类群)一些性双型特征与其进化历史具有... 性双型的特征通常被认为产生于种内争夺交配优先权的斗争。例如,现生和化石的雄性长鼻类动物具有较大的体型和较粗壮的上门齿。本研究阐释了如下现象:化石象型类动物(Elephantiformes,长鼻类的主要类群)一些性双型特征与其进化历史具有相关性,而与性别竞争并非直接相关。在中新世的葛氏铲齿象(Platybelodon grangeri)和狭齿嵌齿象(Gomphotherium angustidens)中,雄性比雌性倾向于具有进化中更进步的特征,如同雄性在进化中领先雌性一步。这种现象可能与雌性偏好的机制相耦合。在象型类动物进化的早期(繁荣期),性别选择压促使雄性比雌性产生更加显著的进步特征;然而,在它们进化的晚期(衰退期),性别选择压似乎减弱,性别的异时进化也减少。这种新的发现或许在大型有蹄类的演化过程中有一定的普遍意义,因为那些繁荣的类群中通常性双型显著,如鹿科和牛科;而衰落的类群中通常性双型不显著。 展开更多
关键词 长鼻类 性双型 偏好 进化
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Influence of expanded polystyrene size on deformation characteristics of light weight soil 被引量:15
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作者 侯天顺 《Journal of Central South University》 SCIE EI CAS 2012年第11期3320-3328,共9页
Deformation characteristics of light weight soil with different EPS (expanded polystyrene) sizes were investigated by consolidation tests.The results show that the confined stress-strain relation curve is in S shape,w... Deformation characteristics of light weight soil with different EPS (expanded polystyrene) sizes were investigated by consolidation tests.The results show that the confined stress-strain relation curve is in S shape,which has a good homologous relation with e-p curve and e-lgp curve,and three types of curves reflect obvious structural characteristics of light weight soil.When cement mixed ratio and EPS volume ratio are the same for different specimens,structural strength decreases with the increase of EPS size,but compressibility indexes basically keep unchanged within the structural strength.The settlement of light weight soil can be divided into instantaneous settlement and primary consolidation settlement.It has no obvious rheology property,and 90% of total consolidation deformation can be finished in 1 min.Settlement-time relation of light weight soil can be predicted by the hyperbolic model.S-lgt curve of light weight soil is not in anti-S shape.It is proved that there is no secondary consolidation section,so consolidation coefficient cannot be obtained by time logarithm method.Structural strength and unit price decrease with the increase of EPS size,but the reducing rate of the structural strength is lower than that of the unit price,so the cost of mixed soil can be reduced by increasing the EPS size.The EPS beads with 3-5 mm in diameter are suggested to be used in the construction process,and the prescription of mixed soil can be optimized. 展开更多
关键词 light weight soil expanded polystyrene (EPS) size effect one-dimensional consolidation theory compressibility index structural strength consolidation test
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Stress-strain relationship of unsaturated cohesive soil 被引量:2
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作者 梅国雄 陈启明 姜朋明 《Journal of Central South University》 SCIE EI CAS 2010年第3期653-657,共5页
A moisture-content based constitutive model was proposed based on the hyperbolic model as an attempt to move towards the implementation of unsaturated soil mechanics into routine geotechnical engineering practice. The... A moisture-content based constitutive model was proposed based on the hyperbolic model as an attempt to move towards the implementation of unsaturated soil mechanics into routine geotechnical engineering practice. The stress-strain behavior of in-situ soil at a depth of 5 m was investigated by conducting undrained triaxial compression tests using the remolded soil samples. The test results show that the stress-strain relationship of unsaturated cohesive soil is still hyperbolic. The values of parameters a and b given in the model decrease with increasing the confining pressure for soil samples with the same moisture content and increase with increasing the moisture content for soil samples under the same confining pressure. The relationships between parameters a, b and moisture content were studied for confining pressures of 100, 150, 200 and 250 kPa. The comparison between the measured and predicted stress-strain curves for an additional group of soil samples, having a moisture content of 25.4%, shows that the proposed moisture content-dependent hyperbolic model provides a good prediction of stress-strain behavior of unsaturated cohesive soil. 展开更多
关键词 unsaturated cohesive soil moisture content triaxial compression test stress-strain relationship
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Modeling and control for hydraulic transmission of unmanned ground vehicle 被引量:1
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作者 王岩 张泽 秦绪情 《Journal of Central South University》 SCIE EI CAS 2014年第1期124-129,共6页
Variable pump driving variable motor(VPDVM) is the future development trend of the hydraulic transmission of an unmanned ground vehicle(UGV).VPDVM is a dual-input single-output nonlinear system with coupling,which is ... Variable pump driving variable motor(VPDVM) is the future development trend of the hydraulic transmission of an unmanned ground vehicle(UGV).VPDVM is a dual-input single-output nonlinear system with coupling,which is difficult to control.High pressure automatic variables bang-bang(HABB) was proposed to achieve the desired motor speed.First,the VPDVM nonlinear mathematic model was introduced,then linearized by feedback linearization theory,and the zero-dynamic stability was proved.The HABB control algorithm was proposed for VPDVM,in which the variable motor was controlled by high pressure automatic variables(HA) and the variable pump was controlled by bang-bang.Finally,simulation of VPDVM controlled by HABB was developed.Simulation results demonstrate the HABB can implement the desired motor speed rapidly and has strong robustness against the variations of desired motor speed,load and pump speed. 展开更多
关键词 unmanned ground vehicle HYDRAULIC nonlinear system high pressure automatic variables bang-bang
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Modeling of radiative properties of metallic microscale rough surface 被引量:1
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作者 王爱华 蔡九菊 《Journal of Central South University》 SCIE EI CAS 2012年第6期1482-1487,共6页
The radiative properties of a gold surface with one-dimensional Gaussian random roughness distribution were obtained with the finite-difference time-domain (FDTD) method and the recursive convolution treatment of th... The radiative properties of a gold surface with one-dimensional Gaussian random roughness distribution were obtained with the finite-difference time-domain (FDTD) method and the recursive convolution treatment of the Drude Model. The bi-directional reflection distribution function (BRDF) for both TM mode and TE mode were obtained and compared with the highly accurate experimental data from the earlier work. The incident wavelength varies from 1.152 μm to 3.392 μm and incident angle is at 300-70°, respectively. The results show that, the predicted values and experimental results are in good agreement. The highly specular peak in the BRDF is reproduced in the numerical simulations, and the increase of the TM mode BRDF is found to be attributed to the effect of a variation in the optical constant at the incident wavelength period. 展开更多
关键词 bi-directional reflection distribution function Gaussian random roughness distribution gold surface finite-differencetime-domain method
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