Classical swine fever virus(CSFV) is the causative agent of classical swine fever, a highly contagious disease of pigs. But there is little information on the recombination in natural populations of CSFVs. Therefore, ...Classical swine fever virus(CSFV) is the causative agent of classical swine fever, a highly contagious disease of pigs. But there is little information on the recombination in natural populations of CSFVs. Therefore, a phylogenetic analysis of 62 fulllength genome CSFV strains, isolated from all over the world, was performed to detect potential recombination events, with the recombinant sequences being analyzed with the SimPlot and RDP programs. The results identified a mosaic virus, Chinese CSFV HCLV(2)(AF091507.1), which is the one naturally emerged recombinant CSFV with two recombination breakpoints at 2 484 and 2 900 bp of the genome alignment. Its two putative parental-like strains were CSFV Shimen(AF092448.2) and CSFV strain C/HVRI(AY805221.1). This work demonstrated that homologous recombination did occur in natural CSFV populations. It had significant implications for understanding the molecular epidemiology of CSFV, and revealed that recombination was an important factor for high genetic diversities of CSFV.展开更多
Japanese encephalitis virus（JEV） is a significant causative agent of arthropod-borne encephalitis and what is less clear that the factors cause the virus wide spread. The objective was to confirm whether the homolog...Japanese encephalitis virus（JEV） is a significant causative agent of arthropod-borne encephalitis and what is less clear that the factors cause the virus wide spread. The objective was to confirm whether the homologous recombination imposed on JEV. The phylogenetic and homologous recombination analyses were performed based on 163 complete JEV genomes which were recently isolated. They were still separated into five genotypes（GI-GV） and the most of recently isolated JEVs were GI rather than GIII in Asian areas including China's Mainland. Two recombinant events were identified in JEV and the evidence of the recombination was observed between China and Japan isolates that partitioned into two distinct subclades, but still the same genotype（GIII）. Our data further suggested that most of the nucleotides in JEV genome were under negative selection; however, changes within codon 2 316（amino acid NS4b-44） showed an evidence of the positive selection.展开更多
大肠杆菌的rnc基因编码产物为RNaseIII酶,RNaseIII酶能降解细菌中绝大多数dsRNA。利用来源于λ噬菌体的Red重组系统和重叠延伸PCR技术(gene splicing by overlap extension PCR,SOE-PCR),敲除了大肠杆菌origami(DE3)菌株的rnc基因,获得...大肠杆菌的rnc基因编码产物为RNaseIII酶,RNaseIII酶能降解细菌中绝大多数dsRNA。利用来源于λ噬菌体的Red重组系统和重叠延伸PCR技术(gene splicing by overlap extension PCR,SOE-PCR),敲除了大肠杆菌origami(DE3)菌株的rnc基因,获得了RNaseIII缺失型菌株M-origami。利用电激法,将构建的TMV运动蛋白基因(movement protein gene,MP)的dsRNA表达载体LMP480导入M-origami菌株中,IPTG诱导表达的结果显示:构建的M-origami/LMP480原核表达系统能高效表达TMV运动蛋白基因的dsRNA。初步的抗病性鉴定显示,表达的dsRNA能够诱发烟草对TMV的抗性。展开更多
基金Supported by the National Natural Science Foundation of China(31370140 31372438)
文摘Classical swine fever virus(CSFV) is the causative agent of classical swine fever, a highly contagious disease of pigs. But there is little information on the recombination in natural populations of CSFVs. Therefore, a phylogenetic analysis of 62 fulllength genome CSFV strains, isolated from all over the world, was performed to detect potential recombination events, with the recombinant sequences being analyzed with the SimPlot and RDP programs. The results identified a mosaic virus, Chinese CSFV HCLV(2)(AF091507.1), which is the one naturally emerged recombinant CSFV with two recombination breakpoints at 2 484 and 2 900 bp of the genome alignment. Its two putative parental-like strains were CSFV Shimen(AF092448.2) and CSFV strain C/HVRI(AY805221.1). This work demonstrated that homologous recombination did occur in natural CSFV populations. It had significant implications for understanding the molecular epidemiology of CSFV, and revealed that recombination was an important factor for high genetic diversities of CSFV.
基金Supported by the National Natural Science Foundation of China(31272569,31270187)Projects in the National Science&Technology Pillar Program during 12th Five-year Plan Period(2013BAD12B04)Harbin Science and Technology Bureau(RC2012XK002003)
文摘Japanese encephalitis virus（JEV） is a significant causative agent of arthropod-borne encephalitis and what is less clear that the factors cause the virus wide spread. The objective was to confirm whether the homologous recombination imposed on JEV. The phylogenetic and homologous recombination analyses were performed based on 163 complete JEV genomes which were recently isolated. They were still separated into five genotypes（GI-GV） and the most of recently isolated JEVs were GI rather than GIII in Asian areas including China's Mainland. Two recombinant events were identified in JEV and the evidence of the recombination was observed between China and Japan isolates that partitioned into two distinct subclades, but still the same genotype（GIII）. Our data further suggested that most of the nucleotides in JEV genome were under negative selection; however, changes within codon 2 316（amino acid NS4b-44） showed an evidence of the positive selection.
文摘大肠杆菌的rnc基因编码产物为RNaseIII酶,RNaseIII酶能降解细菌中绝大多数dsRNA。利用来源于λ噬菌体的Red重组系统和重叠延伸PCR技术(gene splicing by overlap extension PCR,SOE-PCR),敲除了大肠杆菌origami(DE3)菌株的rnc基因,获得了RNaseIII缺失型菌株M-origami。利用电激法,将构建的TMV运动蛋白基因(movement protein gene,MP)的dsRNA表达载体LMP480导入M-origami菌株中,IPTG诱导表达的结果显示:构建的M-origami/LMP480原核表达系统能高效表达TMV运动蛋白基因的dsRNA。初步的抗病性鉴定显示,表达的dsRNA能够诱发烟草对TMV的抗性。
