摘要
对6个野外居群(南川绣线菊和细枝绣线各3个)36个个体进行叶绿体(chloroplast,cp)DNA trnL-trnF片断测序分析。在南川绣线菊中发现了3个单倍型(Ros1-Ros3),在细枝绣线菊中发现了2个单倍型(Myr1-Myr2)。两个种的序列联合分析对位排列后得到850 bp,共有9个变异位点,其中一个为碱基插入或缺失,另外8个为碱基置换,变异位点的百分率为0.11。对单倍型的遗传多样性分析表明同一区域亲缘关系相近的单倍型发生于同一居群中,并且存在着明显的分子系统地理学关系。以蔷薇科另两个外属植物Rosa californica和Sorbaria sorbifolia为外类群构建这两个种的最大简约(MP)树、最大似然(ML)树及贝叶斯树,结果获得了分辨良好的种间关系树。这表明在分子水平上两个种之间存在明显的差异,这与形态学上的表现是相一致的。遗传多样性分析结果表明了cpDNAtrnL-trnF片段对于绣线菊属的分子地理学研究还是比较有效的,可以通过进一步的大面积采样和分析来揭示植物的遗传结构、冰期避难所等问题。
36 individuals in total from 6populations （ Spiraea rosthornii, 3 ; Spiraea myrtiUoides, 3 ） were sampled for sequence analysis to carry out a preliminary study. Total genomie DNA was extracted from silica gel-dried leaves following the CTAB method and used as the template in the polymerase chain reaction （PCR）. The trnL-F intergenic spacer was chosen to be amplified and sequenced in all individuals. 3 chloroplast haplotypes （Rosl-Ros3） were identified by the analysis of cpDNA variation from Spiraea rosthornii, 2 chloroplast haplotypes （ Myrl -Myr2） from Spiraea myrtilloides. The total alignment of the sequences was 850 bp in length. These sequences included 9 polymorphic sites （0. 11% ）. 8 of them were caused by substitution mutations and the other one caused by indels. The re- suh of gene diversity analysis indicated significantly phylogeographic pattern within the entire distribution range. Maximum Likelihood （ML） phylogenetic trees, Maximum Parsimony （MP） phylogenetic trees and a BI multi-locus phylogenetic tree of the 5 cpDNA haplotypes detected from the 36 individuals were recovered from the heuristic search, using Rosa californica and Sorbaria sorbifolia as out- groups. Distinct topology trees were detected indicating that morphology discrepancy is consonant with this at the molecular level for the two species. Gene diversity analysis suggested that cpDNA trnL-trnF sequence is availability for molecular phylogeography of Spiraea.
出处
《生物学杂志》
CAS
CSCD
2012年第4期47-50,64,共5页
Journal of Biology
基金
国家自然科学基金(30970204)
作者简介
作者简介：张发起（1983-）男，汉族，博士研究生，主要从事植物分子遗传多样性研究；
通讯作者：陈世龙，男，博士，研究员．主要研究方向为高山植物的进化与适应，E-mail：slchen@nwipb．cas．cn。
