Gene sequencing is a great way to interpret life, and high-throughput sequencing technology is a revolutionary technological innovation in gene sequencing researches. This technology is characterized by low cost and h...Gene sequencing is a great way to interpret life, and high-throughput sequencing technology is a revolutionary technological innovation in gene sequencing researches. This technology is characterized by low cost and high-throughput data. Currently, high-throughput sequencing technology has been widely applied in multi-level researches on genomics, transcriptomics and epigenomics. And it has fundamentally changed the way we approach problems in basic and translational researches and created many new possibilities. This paper presented a general description of high-throughput sequencing technology and a comprehensive review of its application with plain, concisely and precisely. In order to help researchers finish their work faster and better, promote science amateurs and understand it easier and better.展开更多
This paper investigates the maximum network through- put for resource-constrained space networks based on the delay and disruption-tolerant networking （DTN） architecture. Specifically, this paper proposes a methodol...This paper investigates the maximum network through- put for resource-constrained space networks based on the delay and disruption-tolerant networking （DTN） architecture. Specifically, this paper proposes a methodology for calculating the maximum network throughput of multiple transmission tasks under storage and delay constraints over a space network. A mixed-integer linear programming （MILP） is formulated to solve this problem. Simula- tions results show that the proposed methodology can successfully calculate the optimal throughput of a space network under storage and delay constraints, as well as a clear, monotonic relationship between end-to-end delay and the maximum network throughput under storage constraints. At the same time, the optimization re- sults shine light on the routing and transport protocol design in space communication, which can be used to obtain the optimal network throughput.展开更多
Recent technological advances in cotton(Gossypium hirsutum L.) phenotyping have offered tools to improve the efficiency of data collection and analysis.High-throughput phenotyping(HTP) is a non-destructive and rapid a...Recent technological advances in cotton(Gossypium hirsutum L.) phenotyping have offered tools to improve the efficiency of data collection and analysis.High-throughput phenotyping(HTP) is a non-destructive and rapid approach of monitoring and measuring multiple phenotypic traits related to the growth,yield,and adaptation to biotic or abiotic stress.Researchers have conducted extensive experiments on HTP and developed techniques including spectral,fluorescence,thermal,and three-dimensional imaging to measure the morphological,physiological,and pathological resistance traits of cotton.In addition,ground-based and aerial-based platforms were also developed to aid in the implementation of these HTP systems.This review paper highlights the techniques and recent developments for HTP in cotton,reviews the potential applications according to morphological and physiological traits of cotton,and compares the advantages and limitations of these HTP systems when used in cotton cropping systems.Overall,the use of HTP has generated many opportunities to accurately and efficiently measure and analyze diverse traits of cotton.However,because of its relative novelty,HTP has some limitations that constrains the ability to take full advantage of what it can offer.These challenges need to be addressed to increase the accuracy and utility of HTP,which can be done by integrating analytical techniques for big data and continuous advances in imaging.展开更多
A new approach for improving the throughputs of multi- channel packet radio systems is proposed. Based on the charac- teristics of multi-code CDMA technology, the scheme factitiously improves the transmission bit rate...A new approach for improving the throughputs of multi- channel packet radio systems is proposed. Based on the charac- teristics of multi-code CDMA technology, the scheme factitiously improves the transmission bit rate of a terminal by compressing the packet transmission time and thereby increases the number of the orthogonal spreading codes used by the terminal. By this means, the average interference level of the system is reduced and the system capacity is improved. Simulation results show that the proposed scheme exhibits larger throughput compared with the traditional multi-code CDMA slotted Aloha systems.展开更多
Xenobiotic drugs and chemicals directly interact with DNA,proteins,or other biomolecules in cells. These direct interactions with molecular targets may trigger a series of downstream effects on metabolic-biochemical a...Xenobiotic drugs and chemicals directly interact with DNA,proteins,or other biomolecules in cells. These direct interactions with molecular targets may trigger a series of downstream effects on metabolic-biochemical and regulatory-signaling networks that can invoke cellular consequences leading to adaptive homeostatic or adverse pathological responses. Regulators for drug and chemicals safety have therefore since long required the testing of toxicity in animal models before drugs and pesticides can enter the market. The US National Research Council of the National Academy of Sciences,in its report,Toxicity Testing in the 21st Century: a Vision and a Strategy [1] ,proposed that toxicity testing should become less reliant on apical endpoints from whole animal tests and eventually rely instead on quantitative,doseresponse models based on information from in vitro assays and in vivo biomarkers,which can be used to screen large numbers of chemicals. The present paper reports about a combination of HTS in vitro assays that can be used to study the potential tumorigenic effect of xenobiotics ( drug targets,environmental chemicals) via a set of"sentinel"genes [2] that are functionally interrelated based on evidence weighted functional linkage network ( FLN ) log-likelihood scores ( Linghu et al [3] ) .展开更多
面向作物表型组大数据获取解析、作物种质资源表型鉴定等亟需高效率、智能化和低成本技术、装备及系统的问题,在系统梳理分析国内外农作物高通量表型平台相关技术产品研究现状的基础上,通过组织多学科的协同技术攻关,突破了作物表型组...面向作物表型组大数据获取解析、作物种质资源表型鉴定等亟需高效率、智能化和低成本技术、装备及系统的问题,在系统梳理分析国内外农作物高通量表型平台相关技术产品研究现状的基础上,通过组织多学科的协同技术攻关,突破了作物表型组大数据高通量获取和智能化解析中的关键技术难题,设计了具有自主知识产权的轻小敏捷型多传感器阵列、通用化成像单元和适用于多生境的固定式、移动式高通量表型平台装备,以及配套算法和软件平台,构建了农作物表型组大数据工厂成套技术装备体系。该体系由大田和设施作物高通量自主作业表型平台、室内器官和显微表型平台、大田和设施环境自动化种植管控设备、作物模型系统、数字孪生智慧管控平台和大数据计算服务中心等构成,可实现多生境、自动化、高通量、高效率、高精度的多源作物表型-环境数据协同采集,涵盖农作物群体、个体、器官和显微多重尺度,能够重建农林作物的三维形态结构并精准解析株型、产品、品质、抗性等表型组指标,是发展数字育种和智慧栽培的新一代信息化基础设施。农作物表型组大数据工厂技术装备体系创新了作物表型组大数据的产生、处理和服务模式,可为作物表型组理论技术的发展、基于AI for Science的平台化科研和工厂化的作物种质资源表型鉴定等提供体系化的技术装备支撑。展开更多
基金Supported by the National Natural Science Foundations of China(3127218631301791)
文摘Gene sequencing is a great way to interpret life, and high-throughput sequencing technology is a revolutionary technological innovation in gene sequencing researches. This technology is characterized by low cost and high-throughput data. Currently, high-throughput sequencing technology has been widely applied in multi-level researches on genomics, transcriptomics and epigenomics. And it has fundamentally changed the way we approach problems in basic and translational researches and created many new possibilities. This paper presented a general description of high-throughput sequencing technology and a comprehensive review of its application with plain, concisely and precisely. In order to help researchers finish their work faster and better, promote science amateurs and understand it easier and better.
基金supported by the National Natural Sciences Foundation of China(6113200261321061+3 种基金6123101161201183)the National Basic Research Program of China(2014CB340206)the Tsinghua University Initiative Scientific Research Program(2011Z05117)
文摘This paper investigates the maximum network through- put for resource-constrained space networks based on the delay and disruption-tolerant networking （DTN） architecture. Specifically, this paper proposes a methodology for calculating the maximum network throughput of multiple transmission tasks under storage and delay constraints over a space network. A mixed-integer linear programming （MILP） is formulated to solve this problem. Simula- tions results show that the proposed methodology can successfully calculate the optimal throughput of a space network under storage and delay constraints, as well as a clear, monotonic relationship between end-to-end delay and the maximum network throughput under storage constraints. At the same time, the optimization re- sults shine light on the routing and transport protocol design in space communication, which can be used to obtain the optimal network throughput.
文摘Recent technological advances in cotton(Gossypium hirsutum L.) phenotyping have offered tools to improve the efficiency of data collection and analysis.High-throughput phenotyping(HTP) is a non-destructive and rapid approach of monitoring and measuring multiple phenotypic traits related to the growth,yield,and adaptation to biotic or abiotic stress.Researchers have conducted extensive experiments on HTP and developed techniques including spectral,fluorescence,thermal,and three-dimensional imaging to measure the morphological,physiological,and pathological resistance traits of cotton.In addition,ground-based and aerial-based platforms were also developed to aid in the implementation of these HTP systems.This review paper highlights the techniques and recent developments for HTP in cotton,reviews the potential applications according to morphological and physiological traits of cotton,and compares the advantages and limitations of these HTP systems when used in cotton cropping systems.Overall,the use of HTP has generated many opportunities to accurately and efficiently measure and analyze diverse traits of cotton.However,because of its relative novelty,HTP has some limitations that constrains the ability to take full advantage of what it can offer.These challenges need to be addressed to increase the accuracy and utility of HTP,which can be done by integrating analytical techniques for big data and continuous advances in imaging.
基金supported by the National Basic Research Program of China(973 Program)(2007CB310607)the National Natural Science Foundation of China(60772061)+1 种基金the Natural Science Foundation for the Universities in Jiangsu Province(06KJB51007806KJA51001)
文摘A new approach for improving the throughputs of multi- channel packet radio systems is proposed. Based on the charac- teristics of multi-code CDMA technology, the scheme factitiously improves the transmission bit rate of a terminal by compressing the packet transmission time and thereby increases the number of the orthogonal spreading codes used by the terminal. By this means, the average interference level of the system is reduced and the system capacity is improved. Simulation results show that the proposed scheme exhibits larger throughput compared with the traditional multi-code CDMA slotted Aloha systems.
文摘Xenobiotic drugs and chemicals directly interact with DNA,proteins,or other biomolecules in cells. These direct interactions with molecular targets may trigger a series of downstream effects on metabolic-biochemical and regulatory-signaling networks that can invoke cellular consequences leading to adaptive homeostatic or adverse pathological responses. Regulators for drug and chemicals safety have therefore since long required the testing of toxicity in animal models before drugs and pesticides can enter the market. The US National Research Council of the National Academy of Sciences,in its report,Toxicity Testing in the 21st Century: a Vision and a Strategy [1] ,proposed that toxicity testing should become less reliant on apical endpoints from whole animal tests and eventually rely instead on quantitative,doseresponse models based on information from in vitro assays and in vivo biomarkers,which can be used to screen large numbers of chemicals. The present paper reports about a combination of HTS in vitro assays that can be used to study the potential tumorigenic effect of xenobiotics ( drug targets,environmental chemicals) via a set of"sentinel"genes [2] that are functionally interrelated based on evidence weighted functional linkage network ( FLN ) log-likelihood scores ( Linghu et al [3] ) .
文摘面向作物表型组大数据获取解析、作物种质资源表型鉴定等亟需高效率、智能化和低成本技术、装备及系统的问题,在系统梳理分析国内外农作物高通量表型平台相关技术产品研究现状的基础上,通过组织多学科的协同技术攻关,突破了作物表型组大数据高通量获取和智能化解析中的关键技术难题,设计了具有自主知识产权的轻小敏捷型多传感器阵列、通用化成像单元和适用于多生境的固定式、移动式高通量表型平台装备,以及配套算法和软件平台,构建了农作物表型组大数据工厂成套技术装备体系。该体系由大田和设施作物高通量自主作业表型平台、室内器官和显微表型平台、大田和设施环境自动化种植管控设备、作物模型系统、数字孪生智慧管控平台和大数据计算服务中心等构成,可实现多生境、自动化、高通量、高效率、高精度的多源作物表型-环境数据协同采集,涵盖农作物群体、个体、器官和显微多重尺度,能够重建农林作物的三维形态结构并精准解析株型、产品、品质、抗性等表型组指标,是发展数字育种和智慧栽培的新一代信息化基础设施。农作物表型组大数据工厂技术装备体系创新了作物表型组大数据的产生、处理和服务模式,可为作物表型组理论技术的发展、基于AI for Science的平台化科研和工厂化的作物种质资源表型鉴定等提供体系化的技术装备支撑。
