To ascertain the genetic diversity of gray leaf spot pathogen on Dictamnus dasycarpus popoulation in Heilongjiang Province,a total of 57 strains of Paracercospora dictamnicola were isolated and purified from the disea...To ascertain the genetic diversity of gray leaf spot pathogen on Dictamnus dasycarpus popoulation in Heilongjiang Province,a total of 57 strains of Paracercospora dictamnicola were isolated and purified from the diseased samples collected from five Chinese herbal medicine planting areas in Heilongjiang Province between the years of 2021 and 2022.Repetitive extragenic palindromic polymerase chain reaction(Rep–PCR)was used to amplify 57 isolates of gray leaf spot pathogen on D.dasycarpus from different regions of Heilongjiang Province.The polymorphic bands amplified by three sets of primers accounted for more than 80%.Cluster analysis results showed that at a similarity coefficient of 0.67,the gray leaf spot pathogen on D.dasycarpus in Heilongjiang Province could be divided into five major genetic groups.Genetic diversity parameter analysis indicated that there were certain differences in genetic richness among the geographic populations of gray leaf spot pathogen on D.dasycarpus from different regions.Analysis of molecular variance(AMOVA)revealed that genetic variation among strains mainly originated within populations.The genetic differentiation and relationships of gray leaf spot pathogen on D.dasycarpus from different geographic regions of Heilongjiang Province indicated that genetic differentiation and kinship among populations were somewhat related to their geographic distance.The greater the geographic distance,the higher the genetic differentiation coefficient,and the lower the genetic uniformity among populations.展开更多
Chinese mitten crab （Eriocheir sinensis） is an indigenous and ecologically and economically important species in the Liao River area, but its identification and genetic diversity remain poorly understood. To evaluat...Chinese mitten crab （Eriocheir sinensis） is an indigenous and ecologically and economically important species in the Liao River area, but its identification and genetic diversity remain poorly understood. To evaluate the germplasm resources of this species, samples were collected from these locations： four sub-populations from the Liao River area and one population from the Yangtze River area; one primer was used to distinguish between the Liao River and the Yangtze River crabs. Thirteen loci were used for crab genetic diversity analysis, and basic statistics showed that the collecting samples were purebred in the Liao River area. The average observed heterozygosity （H0） of the Liao River population was 0.5931, and the expected heterozygosity （He） was 0.8064. The polymorphism information content （PIC） was 0.7753, which showed that the Liao River population had high genetic diversity. The genetic differentiation index （FST） averaged 0.0342, meaning a low degree of differentiation; cluster analysis indicated that Hujia （HJ）, Xinli （XL） and Chenjia （CJ） sub-populations were allocated to the same cluster, while Baqiangzi （BQZ） sub-population was isolated. In summary, these data demonstrated that the crabs in the Liao River had high genetic diversity, but low genetic differentiation. Thus, the Liao River population had the potential for breeding selection. Furthermore, this study also provided valuable genetic information for the conservation of Chinese mitten crab.展开更多
The ISSR method was developed to analyze the genetic diversity of 20 wild Wusuli raccoon dog from Nenjiang district. The results showed that there were significant genetic diversity and high polymorphism among individ...The ISSR method was developed to analyze the genetic diversity of 20 wild Wusuli raccoon dog from Nenjiang district. The results showed that there were significant genetic diversity and high polymorphism among individuals of the wild Wusuli raccoon dog. A total of 41 DNA bands were amplified by 9 primers, and 37 of them were polymorphism, the proportion of polymorphism was 90.24%, 2-8 polymorphism bands could be amplified by each primer, and 4.56 on average, the length of the product was 200-2 000 bp.展开更多
Inter-simple Sequence Repeat （ISSR） analysis was applied to assess the genetic diversity within and among five populations of mink from Liaoning Province. A total of 20 primers were screened, five selected primers p...Inter-simple Sequence Repeat （ISSR） analysis was applied to assess the genetic diversity within and among five populations of mink from Liaoning Province. A total of 20 primers were screened, five selected primers produced 35 discernible bands, with 30 （85.71%） being polymorphic, indicating high genetic diversity at the species level. The highest genetic diversity was observed in the brown mink population, whereas the lowest diversity was found in the standard-pitchy mink population. Based on genetic distance （1972）, a dendrogram was constructed by using UPGMA algorithm, and five populations were divided into two major groups. Group I consisted of only the standard-pitchy mink population, and Group II included other four populations, in Group II, sapphire mink was close to brown mink population. The results of genetic differentiation indicated that the genetic differentiation degree between populations was lower and the genetic variation primarily came from within populations. This paper showed that ISSR technique was a reliable tool that could be used to study genetic diversity in the mink.展开更多
Unionidae are an important group of benthic freshwater species.Due to the convergence phenomenon within freshwater mussels,there is still much controversy in the classification of Chinese Unionidae.In China,most studi...Unionidae are an important group of benthic freshwater species.Due to the convergence phenomenon within freshwater mussels,there is still much controversy in the classification of Chinese Unionidae.In China,most studies on freshwater mussels emphasized resource investigation,biology and morphology,while little has been done in genetics,and particularly not in population genetic structure as well as genetic diversity.In order to further understand the status of genetic diversity of different species,random amplified polymorphic DNA(RAPD)markers were used to detect genetic diversity of populations in five species of the genus Anodonta:Anodonta arcaeformis,A.arcaeformis flavotincta,A.fluminea,A.woodiana woodiana and A.w.pacifica.DNA extraction method was based on phenol-chloroform and extracted genomic DNA from the adductor muscle and mantle tissues.Sixteen random primers were used for RAPD amplification and the polymorphism of amplified loci were analyzed.The results demonstrated that the percentage of amplified polymorphic loci for various populations ranged from 34.5%to 62.8%,the mean Shannon’s genetic diversity indices ranged from 0.2021 to 0.3552,and the mean intra-population Nei’s genetic distance ranged from 0.1386 to 0.1713.In all populations of the five species,the genetic diversity for A.arcaeformis was the largest,and that of A.fluminea was the lowest.The inter-population genetic distance between A.w.woodiana and A.w.pacifica was 0.3186,so they can be considered as two sister species at the genetic angle.展开更多
We used microsatellite markers to investigate the genetic parameters of three different polyploidy populations of Misgurnus anguillicaudatus from Honghu City, Hubei Province. Polyacrylamide gel electrophoresis banding...We used microsatellite markers to investigate the genetic parameters of three different polyploidy populations of Misgurnus anguillicaudatus from Honghu City, Hubei Province. Polyacrylamide gel electrophoresis banding patterns of diploid（2n）, triploid（3n） and tetraploid loaches（4n） were analyzed with Pop Gen software. A total of 68 alleles were obtained from seven microsatellite loci and the polymorphism information content（PIC） indices were all above 0.5. The average expected mean heterozygosity values（He） were 0.8420, 0.7186 and 0.8521; the average observed mean heterozygosity values（Ho） were 0.9674, 0.9785 and 0.8928; and the HardyWeinberg P values were 0.3078, 0.3151 and 0.3762, for diploid, triploid and tetraploid individuals, respectively. The results indicated that the three populations were highly polymorphic, with no deviations from Hardy-Weinberg equilibrium observed at all the seven microsatellite loci. This indicated a high level of genetic diversity within the populations. A cluster analysis diagram showed that the shortest genetic distance was between diploid and tetraploid loaches and they shared a close phylogenetic relationship. The triploid and tetraploid individuals had the most distant phylogenetic relationship.展开更多
DNA fingerprints of 37 PVY resistant potato varieties （clones） were generated using PCR-based RAPD analysis. All 37 varieties were differentiated by banding patterns obtained from 17 primers that generated 164 polym...DNA fingerprints of 37 PVY resistant potato varieties （clones） were generated using PCR-based RAPD analysis. All 37 varieties were differentiated by banding patterns obtained from 17 primers that generated 164 polymorphisms. Similarity matrices were calculated with the simple matching coefficient. The genetic distance value among them was between 0.27 and 0.50, with average value being 0.35. The average link clustering algorithm was used to construct a dendrogram with Statistica. They were classified into three groups according to clustering results, and the results presented some geographic relationship. Dendrogram showed close genetic relationships between a number of varieties （clones） of similar pedigree. This study has shown that RAPD marker is a useful tool for potato variety identification, differentiation, and estimation of genetic relationships.展开更多
A total of 69 random primers were screened by using random amplified polymorphic DNA （RAPD） markers to analyze the genetic bands of 32 Kentucky bluegrass cultivars. A total of 197 bands were amplified from 46 primer...A total of 69 random primers were screened by using random amplified polymorphic DNA （RAPD） markers to analyze the genetic bands of 32 Kentucky bluegrass cultivars. A total of 197 bands were amplified from 46 primers, among which 195 bands were polymorphic. Each primer could amplify one to nine polymorphic bands with an average of 4.3 per primer. Based on similarity coefficient analysis of RAPD results and by using NTSYS software to cluster analyze with the average UPGMA method, the result showed that 18 cultivars of the 32 were in group 1, three cultivars were in group 2, two cultivars were in group 3, eight cultivars were in group 4, and only one cultivar in group 5.展开更多
Background: Gossypium arboreum is a diploid species cultivated in the Old World. It possesses favorable characters that are valuable for developing superior cotton cultivars.Method: A set of 197 Gossypium arboreum acc...Background: Gossypium arboreum is a diploid species cultivated in the Old World. It possesses favorable characters that are valuable for developing superior cotton cultivars.Method: A set of 197 Gossypium arboreum accessions were genotyped using 80 genome-wide SSR markers to establish patterns of the genetic diversity and population structure. These accessions were collected from three major G. arboreum growing areas in China. A total of 255 alleles across 80 markers were identified in the genetic diversity analysis.Results: Three subgroups were found using the population structure analysis, corresponding to the Yangtze River Valley, North China, and Southwest China zones of G.arboreum growing areas in China. Average genetic distance and Polymorphic information content value of G. arboreum population were 0.34 and 0.47, respectively, indicating high genetic diversity in the G. arboreum germplasm pool. The Phylogenetic analysis results concurred with the subgroups identified by Structure analysis with a few exceptions. Variations among and within three groups were observed to be 13.61% and 86.39%, respectively.Conclusion: The information regarding genetic diversity and population structure from this study is useful for genetic and genomic analysis and systematic utilization of economically important traits in G. arboreum.展开更多
Total 69 random primers were screened out through RAPD （Random Amplified Polymorphic DNA） markers to analyze the genetic bands of 32 Kentucky bluegrass cultivars. A total of 197 bands were amplified from 46 primers ...Total 69 random primers were screened out through RAPD （Random Amplified Polymorphic DNA） markers to analyze the genetic bands of 32 Kentucky bluegrass cultivars. A total of 197 bands were amplified from 46 primers of them, among which 195 bands were polymorphic. Each primer could amplify one to nine polymorphic bands with an average of 4.3 being amplified from an average of primer. Based on the similarity coefficient analysis of RAPD results, NTSYS software and cluster analysis by using average UPGMA method, the result showed that 18 of 32 cultivars were in group 1, three cultivars were in group 2, two cultivars were in group 3, eight cultivars were in group 4, and there was only one cultivar in group 5, which was C2.展开更多
SSR analysis on genetic diversity of 30 samples was carried out. Five primers selected from 36 primers were used to amplify 30 samples in this experiment, PCR products were separated by 6% polyacrylamide gel electroph...SSR analysis on genetic diversity of 30 samples was carried out. Five primers selected from 36 primers were used to amplify 30 samples in this experiment, PCR products were separated by 6% polyacrylamide gel electrophoresis, silver staining and photographed. The results of SSR were analyzed by UPGMA clustering. The results showed that a total of 21 gene alleles were detected by 5 SSR primers. The number of alleles ranged from 2 to 5 with an average of 4.2.PIC range was 0.257-0.92 1, with an average of 0.543. The average coefficient of genetic similarity of SSR markers among materials was 0.432. Some of cabbage cultivars in the experiment were divided into four groups except cultivars which come from Japan.展开更多
In recent years, the occurrence of rice false smut has become increasingly serious and the area of damage has expanded year by year, so the false smut has become one of the diseases which have seriously affected rice ...In recent years, the occurrence of rice false smut has become increasingly serious and the area of damage has expanded year by year, so the false smut has become one of the diseases which have seriously affected rice yield and quality in Heilongjiang Province. However, the genetic diversity research on false smut in Heilongjiang Province was relatively weak. In the current investigation, seven polymorphic SSR markers were taken to analyze the genetic diversity among 89 strains of the pathogens of rice false smut collected from five main rice growing areas in Heilongjiang Province, China. The results showed that the amplified bands of each pair of primers were between 2 and 7. A total of 43 bands were obtained, and each primer was expanded for 4.8 bands. The genetic similarity coefficient(GSC) between strains by using SSR molecular marker analysis showed that the GSC of the strain of Ustilaginoidea virens was 0.613-0.955, with an average of 0.741. According to the results cluster analysis, when the genetic distance was 0.73, 89 strains were divided into three groups, and five strains of rice smut strains were distributed in three populations, and strains in Harbin City were mainly distributed in group Ⅲ. In Mudanjiang City, the strains were mainly distributed in groups Ⅰ and Ⅲ, and the strains in Suihua City were mainly distributed in groups Ⅰ and Ⅱ, and the strains in Jiamusi City were evenly distributed in groups Ⅰ, Ⅱ and Ⅲ, and the strains in Qiqihar City were mainly distributed in groups Ⅱ and Ⅲ. The results showed that the genetic background of Ustilaginoidea virens in Heilongjiang Province was relatively low in complexity, and the overall inheritance of the strain was relatively stable.展开更多
Short sequence repeats(microsatellite,SSR)and expressed sequence tags-SSR(EST-SSR)markers were employed to analyze the genetic diversity of natural colored cotton varieties.AboutShort sequence repeats(microsatellite,S...Short sequence repeats(microsatellite,SSR)and expressed sequence tags-SSR(EST-SSR)markers were employed to analyze the genetic diversity of natural colored cotton varieties.AboutShort sequence repeats(microsatellite,SSR)and expressed sequence tags-SSR(EST-SSR)marker s were employed to analyze the genetic diversity of natural colored cotton varieties.About 490 pairs of SSR markers spanning the 26 chro mosomes were selected from the cotton micro satellite data-base,they were composed of the NAU,BNL,MUSS,and CIR markers,and there was one marker every 5 cM on average.展开更多
Four different rose hybrid populations were analyzed by ISSR technique with nine polymorphic primers. All of the primers produced 64 bands, of which 59 were polymorphic. The average of polymorphic bands was 6.6 for ea...Four different rose hybrid populations were analyzed by ISSR technique with nine polymorphic primers. All of the primers produced 64 bands, of which 59 were polymorphic. The average of polymorphic bands was 6.6 for each primer. The percentage of polymorphism ranged from 57.1% to 100%, with an average of 92.3%. An UPGMA dendrogram showed five groups. The primer numbered with PI9 and PI11 had relatively high resolution in identifying the F1 offspring in this research.展开更多
This study analyzed the mitochondrial DNA D-loop hypervariable region 601 bp sequence in 12 Eutamias sibiricus from Heilongjiang area. The result showed that the average contents of A, T, G and C were 33.2%, 30.5%, 11...This study analyzed the mitochondrial DNA D-loop hypervariable region 601 bp sequence in 12 Eutamias sibiricus from Heilongjiang area. The result showed that the average contents of A, T, G and C were 33.2%, 30.5%, 11.8% and 24.5% respectively, the A＋T content （63.7%） was obviously higher than the G＋C content （36.3%）. Thirty-six, mutation （approximately 6.0%） sites were found and 9 haplotypes were defined. The mutations types, including transition, transversion and deletion were all found in the detected mtDNA D-loop regions, most of which was transition. The average nucleotide mutational ratio was 1.22%. The nucleotide mutation sites affected the restriction site appearance or disappearance of the restriction site. The research on mtDNA D-loop is focused on the domestic animals and there is no report on Eutamias sibiricus, This study analyzed the mitochondrial DNA D-loop hypervariable in Eutamias sibiricus so as to provide some useful informations for related research in the future.展开更多
PCR-based DNA fingerprinting, REP-PCR(repetitive element PCR), RAPD(randomly amplified polymorphic DNA) and16 S r DNA sequence analyses were used to characterize 23 Acidithiobacillus ferrooxidans strains isolated from...PCR-based DNA fingerprinting, REP-PCR(repetitive element PCR), RAPD(randomly amplified polymorphic DNA) and16 S r DNA sequence analyses were used to characterize 23 Acidithiobacillus ferrooxidans strains isolated from different environments.(GTG)5 and BOXA1 R primer were selected for REP-PCR. Twenty arbitrary primers were used for RAPD to acquire DNA profiles from A. ferrooxidans. Both RAPD and REP-PCR produce complex banding patterns and show good discriminatory ability in differentiating closely related strains of A. ferrooxidans. The strains are clustered into 4 or 5 major groups and reveal genomic diversity using(GTG)5-PCR, BOX-PCR and RAPD analysis. Phylogenetic tree based on 16 S r DNA sequences of 23 strains and related strains shows that they are clustered into two distinct groups. Twelve strains are highly related to a new Acidithiobacillus named Acidithiobacillus ferrivorans. The results indicate that PCR-based methods are effective in revealing genetic diversity among A. ferrooxidans.展开更多
Two Chinese domestic yak populations representing the Plateau type and the Huanhu Alpine type were analysed with 12 bovine microsatellite primers.All primer pairs functioned in the yak genome and polymorphism was foun...Two Chinese domestic yak populations representing the Plateau type and the Huanhu Alpine type were analysed with 12 bovine microsatellite primers.All primer pairs functioned in the yak genome and polymorphism was found at all loci.The allele size ranges and frequencies of the two yak populations were similar and there was considerable overlap with the allele size ranges observed in cattle.Data for European cattle breeds was obtained from the Cattle Diversity Database(CaDBase)to interpret the heterozygosity and genetic distance estimates in yak populations.Heterozygosity estimated for the two yak populations was comparable to that of European cattle while Nei's Genetic Distance DA between the two yak populations was less than distances between the most closely related German cattle breeds.Bovine microsatellite primers proved to be a valuable tool for characterization of yak populations.展开更多
基金Supported by the Green Plant Protection Project of Heilongjiang Province(2130108)Key R&D Program Project of Heilongjiang Province(2023ZX02B0502)Heilongjiang Province Rice Modern Agriculture Industry Technology Collaborative Innovation System Project(2025)。
文摘To ascertain the genetic diversity of gray leaf spot pathogen on Dictamnus dasycarpus popoulation in Heilongjiang Province,a total of 57 strains of Paracercospora dictamnicola were isolated and purified from the diseased samples collected from five Chinese herbal medicine planting areas in Heilongjiang Province between the years of 2021 and 2022.Repetitive extragenic palindromic polymerase chain reaction(Rep–PCR)was used to amplify 57 isolates of gray leaf spot pathogen on D.dasycarpus from different regions of Heilongjiang Province.The polymorphic bands amplified by three sets of primers accounted for more than 80%.Cluster analysis results showed that at a similarity coefficient of 0.67,the gray leaf spot pathogen on D.dasycarpus in Heilongjiang Province could be divided into five major genetic groups.Genetic diversity parameter analysis indicated that there were certain differences in genetic richness among the geographic populations of gray leaf spot pathogen on D.dasycarpus from different regions.Analysis of molecular variance(AMOVA)revealed that genetic variation among strains mainly originated within populations.The genetic differentiation and relationships of gray leaf spot pathogen on D.dasycarpus from different geographic regions of Heilongjiang Province indicated that genetic differentiation and kinship among populations were somewhat related to their geographic distance.The greater the geographic distance,the higher the genetic differentiation coefficient,and the lower the genetic uniformity among populations.
基金Supported by Open Project Program of Key Laboratory of Freshwater Aquatic Biotechnology and Breeding,Ministry of Agriculture,Heilongjiang Fisheries Research Institute,Chinese Academy of Fishery Sciences(FBB2016-01)
文摘Chinese mitten crab （Eriocheir sinensis） is an indigenous and ecologically and economically important species in the Liao River area, but its identification and genetic diversity remain poorly understood. To evaluate the germplasm resources of this species, samples were collected from these locations： four sub-populations from the Liao River area and one population from the Yangtze River area; one primer was used to distinguish between the Liao River and the Yangtze River crabs. Thirteen loci were used for crab genetic diversity analysis, and basic statistics showed that the collecting samples were purebred in the Liao River area. The average observed heterozygosity （H0） of the Liao River population was 0.5931, and the expected heterozygosity （He） was 0.8064. The polymorphism information content （PIC） was 0.7753, which showed that the Liao River population had high genetic diversity. The genetic differentiation index （FST） averaged 0.0342, meaning a low degree of differentiation; cluster analysis indicated that Hujia （HJ）, Xinli （XL） and Chenjia （CJ） sub-populations were allocated to the same cluster, while Baqiangzi （BQZ） sub-population was isolated. In summary, these data demonstrated that the crabs in the Liao River had high genetic diversity, but low genetic differentiation. Thus, the Liao River population had the potential for breeding selection. Furthermore, this study also provided valuable genetic information for the conservation of Chinese mitten crab.
文摘The ISSR method was developed to analyze the genetic diversity of 20 wild Wusuli raccoon dog from Nenjiang district. The results showed that there were significant genetic diversity and high polymorphism among individuals of the wild Wusuli raccoon dog. A total of 41 DNA bands were amplified by 9 primers, and 37 of them were polymorphism, the proportion of polymorphism was 90.24%, 2-8 polymorphism bands could be amplified by each primer, and 4.56 on average, the length of the product was 200-2 000 bp.
文摘Inter-simple Sequence Repeat （ISSR） analysis was applied to assess the genetic diversity within and among five populations of mink from Liaoning Province. A total of 20 primers were screened, five selected primers produced 35 discernible bands, with 30 （85.71%） being polymorphic, indicating high genetic diversity at the species level. The highest genetic diversity was observed in the brown mink population, whereas the lowest diversity was found in the standard-pitchy mink population. Based on genetic distance （1972）, a dendrogram was constructed by using UPGMA algorithm, and five populations were divided into two major groups. Group I consisted of only the standard-pitchy mink population, and Group II included other four populations, in Group II, sapphire mink was close to brown mink population. The results of genetic differentiation indicated that the genetic differentiation degree between populations was lower and the genetic variation primarily came from within populations. This paper showed that ISSR technique was a reliable tool that could be used to study genetic diversity in the mink.
基金the Special Project Foundation(Grant No.2000050406)of Doctoral DegreeMinistry of Education,andthe Natural Science Foundation(Grant No.99J104)of Hubei Province,P.R.China
文摘Unionidae are an important group of benthic freshwater species.Due to the convergence phenomenon within freshwater mussels,there is still much controversy in the classification of Chinese Unionidae.In China,most studies on freshwater mussels emphasized resource investigation,biology and morphology,while little has been done in genetics,and particularly not in population genetic structure as well as genetic diversity.In order to further understand the status of genetic diversity of different species,random amplified polymorphic DNA(RAPD)markers were used to detect genetic diversity of populations in five species of the genus Anodonta:Anodonta arcaeformis,A.arcaeformis flavotincta,A.fluminea,A.woodiana woodiana and A.w.pacifica.DNA extraction method was based on phenol-chloroform and extracted genomic DNA from the adductor muscle and mantle tissues.Sixteen random primers were used for RAPD amplification and the polymorphism of amplified loci were analyzed.The results demonstrated that the percentage of amplified polymorphic loci for various populations ranged from 34.5%to 62.8%,the mean Shannon’s genetic diversity indices ranged from 0.2021 to 0.3552,and the mean intra-population Nei’s genetic distance ranged from 0.1386 to 0.1713.In all populations of the five species,the genetic diversity for A.arcaeformis was the largest,and that of A.fluminea was the lowest.The inter-population genetic distance between A.w.woodiana and A.w.pacifica was 0.3186,so they can be considered as two sister species at the genetic angle.
基金Supported by the Natural Science Foundation of China(31272650)the Natural Science Foundation of Liaoning Province(201102019)
文摘We used microsatellite markers to investigate the genetic parameters of three different polyploidy populations of Misgurnus anguillicaudatus from Honghu City, Hubei Province. Polyacrylamide gel electrophoresis banding patterns of diploid（2n）, triploid（3n） and tetraploid loaches（4n） were analyzed with Pop Gen software. A total of 68 alleles were obtained from seven microsatellite loci and the polymorphism information content（PIC） indices were all above 0.5. The average expected mean heterozygosity values（He） were 0.8420, 0.7186 and 0.8521; the average observed mean heterozygosity values（Ho） were 0.9674, 0.9785 and 0.8928; and the HardyWeinberg P values were 0.3078, 0.3151 and 0.3762, for diploid, triploid and tetraploid individuals, respectively. The results indicated that the three populations were highly polymorphic, with no deviations from Hardy-Weinberg equilibrium observed at all the seven microsatellite loci. This indicated a high level of genetic diversity within the populations. A cluster analysis diagram showed that the shortest genetic distance was between diploid and tetraploid loaches and they shared a close phylogenetic relationship. The triploid and tetraploid individuals had the most distant phylogenetic relationship.
文摘DNA fingerprints of 37 PVY resistant potato varieties （clones） were generated using PCR-based RAPD analysis. All 37 varieties were differentiated by banding patterns obtained from 17 primers that generated 164 polymorphisms. Similarity matrices were calculated with the simple matching coefficient. The genetic distance value among them was between 0.27 and 0.50, with average value being 0.35. The average link clustering algorithm was used to construct a dendrogram with Statistica. They were classified into three groups according to clustering results, and the results presented some geographic relationship. Dendrogram showed close genetic relationships between a number of varieties （clones） of similar pedigree. This study has shown that RAPD marker is a useful tool for potato variety identification, differentiation, and estimation of genetic relationships.
基金Supported by the National Natural Science Foundation of China (30871735 31272191)+2 种基金the National Key Technology R&D Program(2006BAD01A19-4-2)the Natural Science Foundation of Heilongjiang Province (C0207 C200619)
文摘A total of 69 random primers were screened by using random amplified polymorphic DNA （RAPD） markers to analyze the genetic bands of 32 Kentucky bluegrass cultivars. A total of 197 bands were amplified from 46 primers, among which 195 bands were polymorphic. Each primer could amplify one to nine polymorphic bands with an average of 4.3 per primer. Based on similarity coefficient analysis of RAPD results and by using NTSYS software to cluster analyze with the average UPGMA method, the result showed that 18 cultivars of the 32 were in group 1, three cultivars were in group 2, two cultivars were in group 3, eight cultivars were in group 4, and only one cultivar in group 5.
基金supported by the National Natural Science Foundation of China Agriculture(Grant No.2015NWB039)
文摘Background: Gossypium arboreum is a diploid species cultivated in the Old World. It possesses favorable characters that are valuable for developing superior cotton cultivars.Method: A set of 197 Gossypium arboreum accessions were genotyped using 80 genome-wide SSR markers to establish patterns of the genetic diversity and population structure. These accessions were collected from three major G. arboreum growing areas in China. A total of 255 alleles across 80 markers were identified in the genetic diversity analysis.Results: Three subgroups were found using the population structure analysis, corresponding to the Yangtze River Valley, North China, and Southwest China zones of G.arboreum growing areas in China. Average genetic distance and Polymorphic information content value of G. arboreum population were 0.34 and 0.47, respectively, indicating high genetic diversity in the G. arboreum germplasm pool. The Phylogenetic analysis results concurred with the subgroups identified by Structure analysis with a few exceptions. Variations among and within three groups were observed to be 13.61% and 86.39%, respectively.Conclusion: The information regarding genetic diversity and population structure from this study is useful for genetic and genomic analysis and systematic utilization of economically important traits in G. arboreum.
基金Supported by National Natural Science Foundation of China (30871735)National Key Technology R&D Program (2006BAD01A19-4-2)+1 种基金Natural Science Foundation of Heilongjiang Province (C0207C200619)
文摘Total 69 random primers were screened out through RAPD （Random Amplified Polymorphic DNA） markers to analyze the genetic bands of 32 Kentucky bluegrass cultivars. A total of 197 bands were amplified from 46 primers of them, among which 195 bands were polymorphic. Each primer could amplify one to nine polymorphic bands with an average of 4.3 being amplified from an average of primer. Based on the similarity coefficient analysis of RAPD results, NTSYS software and cluster analysis by using average UPGMA method, the result showed that 18 of 32 cultivars were in group 1, three cultivars were in group 2, two cultivars were in group 3, eight cultivars were in group 4, and there was only one cultivar in group 5, which was C2.
文摘SSR analysis on genetic diversity of 30 samples was carried out. Five primers selected from 36 primers were used to amplify 30 samples in this experiment, PCR products were separated by 6% polyacrylamide gel electrophoresis, silver staining and photographed. The results of SSR were analyzed by UPGMA clustering. The results showed that a total of 21 gene alleles were detected by 5 SSR primers. The number of alleles ranged from 2 to 5 with an average of 4.2.PIC range was 0.257-0.92 1, with an average of 0.543. The average coefficient of genetic similarity of SSR markers among materials was 0.432. Some of cabbage cultivars in the experiment were divided into four groups except cultivars which come from Japan.
基金Supported by the Natural Science Foundation of Heilongjiang Province(C2017032)Applied Technology Research and Development Program of Heilongjiang Province(GA19B104)。
文摘In recent years, the occurrence of rice false smut has become increasingly serious and the area of damage has expanded year by year, so the false smut has become one of the diseases which have seriously affected rice yield and quality in Heilongjiang Province. However, the genetic diversity research on false smut in Heilongjiang Province was relatively weak. In the current investigation, seven polymorphic SSR markers were taken to analyze the genetic diversity among 89 strains of the pathogens of rice false smut collected from five main rice growing areas in Heilongjiang Province, China. The results showed that the amplified bands of each pair of primers were between 2 and 7. A total of 43 bands were obtained, and each primer was expanded for 4.8 bands. The genetic similarity coefficient(GSC) between strains by using SSR molecular marker analysis showed that the GSC of the strain of Ustilaginoidea virens was 0.613-0.955, with an average of 0.741. According to the results cluster analysis, when the genetic distance was 0.73, 89 strains were divided into three groups, and five strains of rice smut strains were distributed in three populations, and strains in Harbin City were mainly distributed in group Ⅲ. In Mudanjiang City, the strains were mainly distributed in groups Ⅰ and Ⅲ, and the strains in Suihua City were mainly distributed in groups Ⅰ and Ⅱ, and the strains in Jiamusi City were evenly distributed in groups Ⅰ, Ⅱ and Ⅲ, and the strains in Qiqihar City were mainly distributed in groups Ⅱ and Ⅲ. The results showed that the genetic background of Ustilaginoidea virens in Heilongjiang Province was relatively low in complexity, and the overall inheritance of the strain was relatively stable.
文摘Short sequence repeats(microsatellite,SSR)and expressed sequence tags-SSR(EST-SSR)markers were employed to analyze the genetic diversity of natural colored cotton varieties.AboutShort sequence repeats(microsatellite,SSR)and expressed sequence tags-SSR(EST-SSR)marker s were employed to analyze the genetic diversity of natural colored cotton varieties.About 490 pairs of SSR markers spanning the 26 chro mosomes were selected from the cotton micro satellite data-base,they were composed of the NAU,BNL,MUSS,and CIR markers,and there was one marker every 5 cM on average.
基金Supported by the National Natural Science Foundation of China (31171986)Science and Technology Creative Talents of the Special Fund Project of Harbin (RC2012XK002013)Overseas Scholars Research Funding Project of Education Department of Heilongjiang Province (1154h04)
文摘Four different rose hybrid populations were analyzed by ISSR technique with nine polymorphic primers. All of the primers produced 64 bands, of which 59 were polymorphic. The average of polymorphic bands was 6.6 for each primer. The percentage of polymorphism ranged from 57.1% to 100%, with an average of 92.3%. An UPGMA dendrogram showed five groups. The primer numbered with PI9 and PI11 had relatively high resolution in identifying the F1 offspring in this research.
文摘This study analyzed the mitochondrial DNA D-loop hypervariable region 601 bp sequence in 12 Eutamias sibiricus from Heilongjiang area. The result showed that the average contents of A, T, G and C were 33.2%, 30.5%, 11.8% and 24.5% respectively, the A＋T content （63.7%） was obviously higher than the G＋C content （36.3%）. Thirty-six, mutation （approximately 6.0%） sites were found and 9 haplotypes were defined. The mutations types, including transition, transversion and deletion were all found in the detected mtDNA D-loop regions, most of which was transition. The average nucleotide mutational ratio was 1.22%. The nucleotide mutation sites affected the restriction site appearance or disappearance of the restriction site. The research on mtDNA D-loop is focused on the domestic animals and there is no report on Eutamias sibiricus, This study analyzed the mitochondrial DNA D-loop hypervariable in Eutamias sibiricus so as to provide some useful informations for related research in the future.
基金Project(2010CB630901)supported by the National Basic Research Program of China
文摘PCR-based DNA fingerprinting, REP-PCR(repetitive element PCR), RAPD(randomly amplified polymorphic DNA) and16 S r DNA sequence analyses were used to characterize 23 Acidithiobacillus ferrooxidans strains isolated from different environments.(GTG)5 and BOXA1 R primer were selected for REP-PCR. Twenty arbitrary primers were used for RAPD to acquire DNA profiles from A. ferrooxidans. Both RAPD and REP-PCR produce complex banding patterns and show good discriminatory ability in differentiating closely related strains of A. ferrooxidans. The strains are clustered into 4 or 5 major groups and reveal genomic diversity using(GTG)5-PCR, BOX-PCR and RAPD analysis. Phylogenetic tree based on 16 S r DNA sequences of 23 strains and related strains shows that they are clustered into two distinct groups. Twelve strains are highly related to a new Acidithiobacillus named Acidithiobacillus ferrivorans. The results indicate that PCR-based methods are effective in revealing genetic diversity among A. ferrooxidans.
文摘Two Chinese domestic yak populations representing the Plateau type and the Huanhu Alpine type were analysed with 12 bovine microsatellite primers.All primer pairs functioned in the yak genome and polymorphism was found at all loci.The allele size ranges and frequencies of the two yak populations were similar and there was considerable overlap with the allele size ranges observed in cattle.Data for European cattle breeds was obtained from the Cattle Diversity Database(CaDBase)to interpret the heterozygosity and genetic distance estimates in yak populations.Heterozygosity estimated for the two yak populations was comparable to that of European cattle while Nei's Genetic Distance DA between the two yak populations was less than distances between the most closely related German cattle breeds.Bovine microsatellite primers proved to be a valuable tool for characterization of yak populations.
