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Breaking Through Oral Gene Delivery Barriers:Peptide Nanocarriers Delivering CAR Genes for Targeted Pancreatic Cancer Therapy
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作者 YIN Ting 《生物化学与生物物理进展》 北大核心 2026年第2期273-274,共2页
A recently published study(Xin et al.,Prog Biochem Biophys,2026,53(2):431-441.DOI:10.3724/j.pibb.2025.0508)addresses the therapeutic challenges of pancreatic ductal adenocarcinoma(PDAC)by innovatively developing an or... A recently published study(Xin et al.,Prog Biochem Biophys,2026,53(2):431-441.DOI:10.3724/j.pibb.2025.0508)addresses the therapeutic challenges of pancreatic ductal adenocarcinoma(PDAC)by innovatively developing an orally administered nanogene delivery system.Designed to achieve in situ,efficient delivery of chimeric antigen receptor(CAR)genes to tumor sites,this approach offers a novel strategy for CAR-macrophage(CAR-M)based immunotherapy.Its key highlights are as follows. 展开更多
关键词 targeted pancreatic cancer therapy situ delivery orally administered nanogene delivery systemdesigned car genes pancreatic ductal adenocarcinoma pdac oral gene delivery chimeric antigen receptor peptide nanocarriers
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Cloning and Bioinformatics Analysis of DsCBL4 Gene from Dianthus spiculifolius Schur
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作者 Di Haoyang Hou Xinyang +4 位作者 Li Yan You Xue Yu Yuxin Wang Jingang Zhang Haizhen 《Journal of Northeast Agricultural University(English Edition)》 2026年第1期22-34,共13页
Dianthus spiculifolius Schur,as an emerging ornamental plant,has extensive applications and economic values.In this study,the DsCBL4 gene was successfully cloned,and its tissue-specific expression,expression patterns ... Dianthus spiculifolius Schur,as an emerging ornamental plant,has extensive applications and economic values.In this study,the DsCBL4 gene was successfully cloned,and its tissue-specific expression,expression patterns under various abiotic stresses,subcellular localization,and bioinformatics analysis of the encoded amino acid sequence were conducted.The results showed that the coding region of the DsCBL4 gene was 675 bp long,encoding 224 amino acids.It had high homology with the amino acids encoded by Amaranthus tricolor,Chenopodium quinoa and Spinacia oleracea.The predicted relative molecular mass of DsCBL4 was 25.61 ku,with an isoelectric point of 4.58,and it had phosphorylation sites,belonging to an unstable hydrophilic protein.Its secondary structure includedα-helices,irregular coils and extended chains.The tertiary structure prediction revealed that DsCBL4 had four EFhand calcium-binding domains necessary for Ca2+binding in plant calmodulin-like proteins and the FPSF motif for calcineurin B-like protein(CBL)-interacting protein kinase(CIPK)activation.The expression level of the DsCBL4 gene showed tissue specificity,with the highest expression in roots.It was induced by drought,low temperature,combined drought and low temperature,salt stress,nitrogen stress,phosphorus stress,calcium ion stress,high temperature stress,and abscisic acid(ABA)stress.Both transient infection in Nicotiana tabacum L.and stable expression in transgenic Arabidopsis thaliana showed that the DsCBL4 protein was localized to the cell membrane.These results suggested that DsCBL4 might be involved in the abiotic stress response of Dianthus spiculifolius through the calcium signaling pathway,providing a theoretical basis for understanding its molecular mechanism.This study provided an important reference for further exploring the role of the DsCBLs gene family in plant stress resistance. 展开更多
关键词 Dianthus spiculifolius Schur CBL4 gene gene cloning expression analysis structural analysis
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Identification of shared key genes and pathways in osteoarthritis and sarcopenia patients based on bioinformatics analysis
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作者 SUN Yuyan LUO Ziyu +6 位作者 LING Huixian WU Sha SHEN Hongwei FU Yuanyuan NGO Thainamanh WANG Wen KONG Ying 《中南大学学报(医学版)》 北大核心 2025年第3期430-446,共17页
Objective:Osteoarthritis(OA)and sarcopenia are significant health concerns in the elderly,substantially impacting their daily activities and quality of life.However,the relationship between them remains poorly underst... Objective:Osteoarthritis(OA)and sarcopenia are significant health concerns in the elderly,substantially impacting their daily activities and quality of life.However,the relationship between them remains poorly understood.This study aims to uncover common biomarkers and pathways associated with both OA and sarcopenia.Methods:Gene expression profiles related to OA and sarcopenia were retrieved from the Gene Expression Omnibus(GEO)database.Differentially expressed genes(DEGs)between disease and control groups were identified using R software.Common DEGs were extracted via Venn diagram analysis.Gene ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)enrichment analyses were conducted to identify biological processes and pathways associated with shared DEGs.Protein-protein interaction(PPI)networks were constructed,and candidate hub genes were ranked using the maximal clique centrality(MCC)algorithm.Further validation of hub gene expression was performed using 2 independent datasets.Receiver operating characteristic(ROC)curve analysis was used to evaluate the predictive value of key genes for OA and sarcopenia.Mouse models of OA and sarcopenia were established.Hematoxylin-eosin and Safranin O/Fast Green staining were used to validate the OA model.The sarcopenia model was validated via rotarod testing and quadriceps muscle mass measurement.Real-time reverse transcription PCR(real-time RT-PCR)was employed to assess the mRNA expression levels of candidate key genes in both models.Gene set enrichment analysis(GSEA)was conducted to identify pathways associated with the selected shared key genes in both diseases.Results:A total of 89 common DEGs were identified in the gene expression profiles of OA and sarcopenia,including 76 upregulated and 13 downregulated genes.These 89 DEGs were significantly enriched in protein digestion and absorption,the PI3K-Akt signaling pathway,and extracellular matrix-receptor interaction.PPI network analysis and MCC algorithm analysis of the 89 common DEGs identified the top 17 candidate hub genes.Based on the differential expression analysis of these 17 candidate hub genes in the validation datasets,AEBP1 and COL8A2 were ultimately selected as the common key genes for both diseases,both of which showed a significant upregulation trend in the disease groups(all P<0.05).The value of area under the curve(AUC)for AEBP1 and COL8A2 in the OA and sarcopenia datasets were all greater than 0.7,indicating that both genes have potential value in predicting OA and sarcopenia.Real-time RT-PCR results showed that the mRNA expression levels of AEBP1 and COL8A2 were significantly upregulated in the disease groups(all P<0.05),consistent with the results observed in the bioinformatics analysis.GSEA revealed that AEBP1 and COL8A2 were closely related to extracellular matrix-receptor interaction,ribosome,and oxidative phosphorylation in OA and sarcopenia.Conclusion:AEBP1 and COL8A2 have the potential to serve as common biomarkers for OA and sarcopenia.The extracellular matrix-receptor interaction pathway may represent a potential target for the prevention and treatment of both OA and sarcopenia. 展开更多
关键词 OSTEOARTHRITIS SARCOPENIA BIOINFORMATICS extracellular matrix-receptor interaction key genes
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Five novel ZNF469 gene mutations in sporadic keratoconus patients in the Han Chinese population
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作者 CAO Yanna DENG Zhihong +3 位作者 HE Guiyun XIAO Li ZHANG Feng SU Feng 《中南大学学报(医学版)》 北大核心 2025年第6期931-939,共9页
Objective:Keratoconus(KC)is a progressive corneal ectasia disorder,arising from a myriad of causes including genetic predispositions,environmental factors,biomechanical influences,and inflammatory reactions.This study... Objective:Keratoconus(KC)is a progressive corneal ectasia disorder,arising from a myriad of causes including genetic predispositions,environmental factors,biomechanical influences,and inflammatory reactions.This study aims to identify potential pathogenetic gene mutations in patients with sporadic KC in the Han Chinese population.Methods:Twenty-five patients with primary KC as well as 50 unrelated population matched healthy controls,were included in this study to identify potential pathogenic gene mutations among sporadic KC patients in the Han Chinese population.Sanger sequencing and whole-exome sequencing(WES)were used to analyze mutations in the zinc finger protein 469(ZNF469)gene.Bioinformatics analysis was conducted to explore the potential role of ZNF469 in KC pathogenesis.Results:Five novel heterozygous missense variants were identified in KC patients.Among them,2 compound heterozygous variants,c.8986G>C(p.E2996Q)with c.11765A>C(p.D3922A),and c.4423C>G(p.L1475V)with c.10633G>A(p.G3545R),were determined to be possible pathogenic factors for KC.Conclusion:Mutations in the ZNF469 gene may contribute to the development of KC in the Han Chinese population.These mutation sites may provide valuable information for future genetic screening of KC patients and their families. 展开更多
关键词 KERATOCONUS ZNF469 gene MUTATION Sanger sequencing Han Chinese population
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Heat stress affects expression levels of circadian clock gene Bmal1 and cyclins in rat thoracic aortic endothelial cells
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作者 CHANG Xiaoyu ZHANG Hanwen +5 位作者 CAO Hongting HOU Ling MENG Xin TAO Hong LUO Yan LI Guanghua 《南方医科大学学报》 北大核心 2025年第7期1353-1362,共10页
Objective To investigate the structural changes of rat thoracic aorta and changes in expression levels of Bmal1 and cyclins in thoracic aorta endothelial cells following heat stress.Methods Twenty male SD rats were ra... Objective To investigate the structural changes of rat thoracic aorta and changes in expression levels of Bmal1 and cyclins in thoracic aorta endothelial cells following heat stress.Methods Twenty male SD rats were randomized equally into control group and heat stress group.After exposure to 32℃for 2 weeks in the latter group,the rats were examined for histopathological changes and Bmal1 expression in the thoracic aorta using HE staining and immunohistochemistry.In the cell experiments,cultured rat thoracic aortic endothelial cells(RTAECs)were incubated at 40℃for 12 h with or without prior transfection with a Bmal1-specific small interfering RNA(si-Bmal1)or a negative sequence.In both rat thoracic aorta and RTAECs,the expressions of Bmal1,the cell cycle proteins CDK1,CDK4,CDK6,and cyclin B1,and apoptosis-related proteins Bax and Bcl-2 were detected using Western blotting.TUNEL staining was used to detect cell apoptosis in rat thoracic aorta,and the changes in cell cycle distribution and apoptosis in RTAECs were analyzed with flow cytometry.Results Compared with the control rats,the rats exposed to heat stress showed significantly increased blood pressures and lowered heart rate with elastic fiber disruption and increased expressions of Bmal1,cyclin B1 and CDK1 in the thoracic aorta(P<0.05).In cultured RTAECs,heat stress caused significant increase of Bmal1,cyclin B1 and CDK1 protein expression levels,which were obviously lowered in cells with prior si-Bmal1 transfection.Bmal1 knockdown also inhibited heat stress-induced increase of apoptosis in RTAECs as evidenced by decreased expression of Bax and increased expression of Bcl-2.Conclusion Heat stress upregulates Bmal1 expression and causes alterations in expressions of cyclins to trigger apoptosis of rat thoracic aorta endothelial cells,which can be partly alleviated by suppressing Bmal1 expression. 展开更多
关键词 heat stress circadian clock genes BMAL1 thoracic aortic endothelial cells CYCLINS APOPTOSIS
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Association of QPRT gene polymorphisms with postpartum depression in Chinese cesarean parturients:A candidate gene association study
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作者 ZHAO Shanshan LIN Guoxin +3 位作者 LI Ziyuan PING Anqi WANG Saiying DUAN Kaiming 《中南大学学报(医学版)》 北大核心 2025年第12期2214-2225,共12页
Objective:Postpartum depression(PPD)is a common and serious mental disorder after childbirth,imposing a heavy burden on mothers,infants,and families.Abnormalities in the tryptophan-kynurenine(TRP-KYN)metabolic pathway... Objective:Postpartum depression(PPD)is a common and serious mental disorder after childbirth,imposing a heavy burden on mothers,infants,and families.Abnormalities in the tryptophan-kynurenine(TRP-KYN)metabolic pathway are considered to be involved in its pathogenesis,but the role of quinolinic acid phosphoribosyltransferase(QPRT),a key downstream enzyme in this pathway,remains unclear.This study aims to explore the association between PPD in women undergoing cesarean section and QPRT gene polymorphisms,as well as other risk factors for PPD.Methods:A candidate gene association study design was adopted.From January 2024 to June 2025,full-term singleton pregnant women scheduled to undergo elective cesarean section under spinal anesthesia were recruited at the Third Xiangya Hospital of Central South University and Hunan Provincial Maternal and Child Health Hospital.At 42 days postpartum,postpartum depression was assessed using the Edinburgh Postnatal Depression Scale(EPDS).Peripheral blood samples were collected and genomic DNA was extracted.Four QPRT single nucleotide polymorphism loci(rs1134700,rs2303255,rs9922666,and rs9933310)were selected for genotyping to analyze the association between these loci and PPD.Bioinformatics analysis and dual-luciferase reporter gene assays were performed to investigate the possible mechanism by which significant loci influence disease occurrence.Results:A total of 362 women were ultimately included in the analysis,among whom 29 were diagnosed with PPD,with an incidence of 8.01%.Analysis of general data showed that comorbid hypertension or thyroid disease,inconsistency between neonatal sex and expectation,prenatal depression,prenatal self-harm ideation,domestic violence,poor marital and mother-in-law/daughter-in-law relationships,stressful life events,dissatisfaction with current life status,poor mood during pregnancy,and high stress during pregnancy were all risk factors for PPD in women undergoing cesarean section(all P<0.05).Genetic association analysis revealed that the QPRT rs9933310 A>G polymorphism was associated with PPD.Women carrying the rs9933310 GG or AG genotype had a 2.92-fold higher risk of PPD compared with women with the AA genotype(OR=2.92,95%CI 1.18 to 6.99).Expression quantitative trait loci(eQTL)analysis suggested that the G allele at this locus was associated with downregulation of QPRT expression(AA>AG>GG).Multi-database queries indicated that the rs9933310 locus may have promoter and/or enhancer activity.In addition,JASPAR database prediction and experimental validation showed that the mutant(G)allele at the QPRT rs9933310 locus was more likely than the wild-type(A)allele to weaken promoter-enhancer activity at this locus,and resulted in loss of transcription factors Gata1,GATA2,GATA3,Gata4,Sox17,Sox2,Sox3,Sox6,and SRY,thereby regulating QPRT expression.Conclusion:Comorbid hypertension or thyroid disease,inconsistency between neonatal sex and expectation,prenatal depression,prenatal self-harm ideation,domestic violence,poor marital and mother-in-law/daughter-in-law relationships,stressful life events,dissatisfaction with current life status,poor mood during pregnancy,high stress during pregnancy,and mutation at the QPRT rs9933310 locus are all risk factors for PPD.The QPRT rs9933310 G allele is an independent risk factor for PPD in women undergoing cesarean section,and its pathogenic mechanism may involve downregulation of QPRT expression and disruption of TRP-KYN pathway homeostasis.QPRT has a potential role in the pathogenesis of PPD and may become a novel antidepressant target acting on the TRPKYN pathway. 展开更多
关键词 QPRT gene postpartum depression tryptophan-kynurenine metabolic pathway single nucleotide polymorphism cesarean section parturients
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Identification of high‑affinity nicotinic acid transporter genes from Verticillium dahliae and functional analysis based on HIGS technology
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作者 WANG Yuan KAMAU Stephen +2 位作者 SONG Shenglong ZHANG Yong ZHANG Xinyu 《Journal of Cotton Research》 2025年第2期242-255,共14页
Background Verticillium dahliae,a soil-borne fungi,can cause Verticillium wilt,and seriously diminish the yield and quality of cotton.However,the pathogenic mechanism of V.dahliae is complex and not clearly understood... Background Verticillium dahliae,a soil-borne fungi,can cause Verticillium wilt,and seriously diminish the yield and quality of cotton.However,the pathogenic mechanism of V.dahliae is complex and not clearly understood at the moment.This study aimed to identify the high-affinity nicotinic acid transporter genes in V.dahliae.The gene expression profiles in V.dahliae following sensing of root exudates from susceptible and resistant cotton varieties were analyzed.The function of VdNAT1 in the pathogenic process of V.dahliae was studied using the tobacco rattle virus(TRV)-based host-induced gene silencing(HIGS)technique.Results Eight high-affinity nicotinic acid transporter genes were identified from V.dahliae through the bioinformatics method.Each protein contains a conserved major facilitator superfamily(MFS)domain,which belongs to the MFS superfamily.Evolutionary relationship analysis revealed that all 8 genes belong to the anion:cation symporter(ACS)subfamily.All proteins have transmembrane domains,ranging from 7 to 12.The expression levels of most VdNAT genes were significantly increased after induction by root exudates from susceptible cotton varieties.Silencing VdNAT1 gene by HIGS significantly inhibited the accumulation of fungal biomass in cotton plants,and alleviated the disease symptoms of cotton.Conclusions Eight VdNAT genes were identified from V.dahliae,and most VdNAT genes was up-regulated after induced by root exudates from susceptible cotton variety.In addition,VdNAT1 is required for the pathogenicity of V.dahliae.Overall,these findings will facilitate the pathogenic molecular mechanism of V.dahliae and provide candidate genes. 展开更多
关键词 Verticillium dahliae High-affinity nicotinic acid transporter gene Cotton VdNAT1 Host-induced gene silencing Major facilitator superfamily
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LOX-1 gene knockout improves metabolic dysfunctionassociated steatohepatitis in mice
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作者 HUANG Ruihua YANG Yongyu +2 位作者 ZHOU Shuhan ZHU Xiaoyun HU Changping 《中南大学学报(医学版)》 北大核心 2025年第11期2038-2050,共13页
Objective:Metabolic dysfunction-associated steatohepatitis(MASH),a progressive subtype of metabolic dysfunction-associated steatotic liver disease(MASLD),is characterized by hepatic steatosis,lobular inflammation,and ... Objective:Metabolic dysfunction-associated steatohepatitis(MASH),a progressive subtype of metabolic dysfunction-associated steatotic liver disease(MASLD),is characterized by hepatic steatosis,lobular inflammation,and hepatocyte ballooning,and may further progress to liver fibrosis and cirrhosis.Lectin-like oxidized low-density lipoprotein receptor-1(LOX-1),a member of the scavenger receptor family,recognizes and binds oxidized low-density lipoprotein.This study aims to investigate the role of LOX-1 in MASH progression.Methods:LOX-1 expression in MASLD mouse liver was analyzed using Gene Expression Omnibus(GEO)datasets.Immunofluorescence staining was performed to detect LOX-1 and alpha-smooth muscle actin(α-SMA)levels and co-localization in fibrotic liver tissues and LX-2 cells.LOX-1 knockout(Lox-1^(−/−))mice were generated using CRISPR/caspase-9(Cas9)and genotyped by PCR and Sanger sequencing.Wild-type(WT)and Lox-1^(−/−)mice were randomized into control and Western diet model groups.Serum and liver samples were collected for alanine aminotransferase(ALT)and aspartate aminotransferase(AST)measurement by biochemical kits,liver structure evaluation by hematoxylin and eosin(HE)staining,collagen deposition by Masson staining,lipid accumulation by Oil Red O staining,and fibrotic marker gene expression by real-time quantitative PCR(RT-qPCR).Network pharmacology and search tool for the retrieval of interacting genes/proteins(STRING)-based protein-protein interaction(PPI)with Gene Ontology(GO)enrichment were used to predict downstream targets and pathways.Results:The results from the GEO datasets GSE30552 and GSE40041 indicated LOX-1 mRNA was upregulated in high fat diet(HFD)and bile duct ligation(BDL)mouse models(both P<0.001).LOX-1 and α-SMA levels were elevated in fibrotic liver tissues.Lox-1^(−/−)mice were successfully established.Biochemical tests showed that serum AST and ALT levels were significantly elevated in WT mice fed a Western diet(both P<0.001),and these levels decreased after LOX-1 knockout(both P<0.05).HE staining revealed that WT mice on the Western diet exhibited marked hepatocellular ballooning degeneration,steatosis,inflammatory cell infiltration,and periportal fibroplasia,which were significantly ameliorated by LOX-1 knockout.Masson staining demonstrated increased blue-stained collagen fibers in the liver tissues of WT mice fed the Western diet compared with controldiet mice,and LOX-1 knockout inhibited collagen fiber deposition(all P<0.05).RT‑qPCR results showed that hepatic mRNA levels of Acta2,Col1a1,and Timp1 were significantly increased in Western diet-fed mice,and LOX-1 knockout reduced the expression of these fibrogenic marker genes.Oil Red O staining indicated that hepatocytes in WT mice fed the Western diet were notably enlarged,displayed macrovesicular steatosis,and exhibited diffusely distributed red lipid droplets,whereas LOX-1 knockout alleviated hepatic lipid accumulation(both P<0.001).RT‑qPCR results further demonstrated that knockdown of LOX-1 reduced Acta2,Col1a1,and Timp1 mRNA levels in LX‑2 cells(all P<0.05).Immunofluorescence analysis revealed co‑localization of LOX-1 and α‑SMA in LX‑2 cells,and LOX-1 silencing suppressed α‑SMA expression.Network pharmacology suggested LOX-1 may promote MASH via lipid and cholesterol metabolism networks.Conclusion:LOX-1 gene knockout ameliorates Western diet-induced MASH in mice and may serve as a potential therapeutic target. 展开更多
关键词 lectin-like oxidized low-density lipoprotein receptor-1 Western diet model metabolic dysfunction-associated steatohepatitis metabolic dysfunction-associated steatotic liver disease gene Expression Omnibus dataset
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石仙桃内参基因筛选与应用
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作者 刘保财 胡学博 +3 位作者 张武君 赵云青 黄颖桢 陈菁瑛 《生物技术通报》 北大核心 2026年第2期158-168,共11页
【目的】石仙桃(Pholidota chinensis)系兰科(Orchidaceae)石仙桃属(Pholidota)珍稀濒危的多年附生草本植物,为了研究该物种及近源种功能基因的表达量,迫切需要筛选其稳定的内参基因用于实时荧光定量PCR(RT-qPCR)分析。【方法】采用RT-q... 【目的】石仙桃(Pholidota chinensis)系兰科(Orchidaceae)石仙桃属(Pholidota)珍稀濒危的多年附生草本植物,为了研究该物种及近源种功能基因的表达量,迫切需要筛选其稳定的内参基因用于实时荧光定量PCR(RT-qPCR)分析。【方法】采用RT-qPCR检测11个管家基因在石仙桃不同组织(根、根状茎、假鳞茎、叶片、芽、花序)和非生物胁迫(20 mmol/L MeJA和50 mmol/L NaCl喷洒叶片、不同光照强度)的表达量,用geNorm、NormFinder、BestKeeper、ΔCt和RefFinder几何平均值综合分析11个内参基因表达的稳定性。【结果】选取的11个基因在石仙桃的不同组织中具有单一的扩增条带和峰图,扩增效率及表达丰度基本达到了内参基因的要求,表达稳定性表明,Actin/f58p0可作为不同组织基因表达的最佳内参基因,而TUA3/f11p0可作为非生物胁迫的最佳内参基因。分别以Actin/f58p0和TUA3/f11p0作为内参基因对石仙桃中天麻素合成关键基因GT1、GT2、GT3-01、GT3-02、GT4、ADH-01、ADH-02、ADH-03表达分析,在不同组织中,二者表达趋势基本一致,但HCT基因表达则更适宜以Actin/f58p0作为内参基因;非生物胁迫中,以TUA3/f11p0作为内参基因更佳,尤其是在NaCl和MeJA处理中,但在光照胁迫下,Actin/f58p0和TUA3/f11p0皆可作为内参,MeJA较NaCl对石仙桃基因表达量影响时间长。【结论】Actin/f58p0和TUA3/f11p0分别可作为石仙桃不同组织、活性成分和非生物胁迫的内参基因,为石仙桃及近缘物种功能基因的发掘、表达量分析等研究奠定基础。 展开更多
关键词 石仙桃 内参基因 组织 光照 NACL MEJA RT-QPCR 基因表达
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伴FGFR2基因易位的肝内胆管癌临床病理特征
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作者 眭怡群 姚娟 +4 位作者 叶振宇 徐蒙蒙 王志明 张永胜 曹志飞 《临床与实验病理学杂志》 北大核心 2026年第3期297-303,共7页
目的探讨具有成纤维细胞生长因子受体2(fibroblast growth factor receptor 2,FGFR2)易位肝内胆管癌(intrahepatic cholangiocarcinoma,ICC)的临床病理特点及分子特征。方法回顾性分析8例FGFR2易位ICC的临床表现、影像学检查、病理学特... 目的探讨具有成纤维细胞生长因子受体2(fibroblast growth factor receptor 2,FGFR2)易位肝内胆管癌(intrahepatic cholangiocarcinoma,ICC)的临床病理特点及分子特征。方法回顾性分析8例FGFR2易位ICC的临床表现、影像学检查、病理学特点及分子特征,并与32例FGFR2易位阴性ICC病例进行对比分析。结果FGFR2易位ICC肿瘤细胞呈立方形或多边形,在纤维硬化性间质中呈相互吻合的管状、小梁状、实性巢状或乳头状生长。与FGFR2易位阴性者相比,FGFR2易位阳性ICC乙型肝炎病毒感染率更高(P=0.042),组织学亚型以小胆管型或混合型更常见(P=0.037),p53、HER2、c-Met、BRAF V600E蛋白突变率或表达率有降低趋势,但无统计学意义(P>0.05)。联合性别、乙型肝炎病毒感染、TNM分期、组织学亚型及肿瘤细胞核级预测FGFR2易位的受试者工作特征(receiver operating characteristic,ROC)曲线下面积为0.912(P<0.001),大于任意特征独立预测的曲线下面积。与TP53野生型FGFR2易位ICC相比,伴TP53共突变的FGFR2易位ICC肿瘤细胞核级更高(P=0.036),TNM分期更晚(P=0.036),总生存率更低(P=0.009)。结论独特的临床病理特征有助于FGFR2基因融合突变的筛选及识别出TP53共突变病例,为ICC患者提供更精准的治疗。 展开更多
关键词 肝内胆管癌 成纤维细胞生长因子受体2 基因易位 基因融合
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“十四五”我国大白菜遗传育种研究进展 被引量:2
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作者 张凤兰 张斌 +7 位作者 苏同兵 于拴仓 余阳俊 张德双 赵岫云 汪维红 李佩荣 辛晓云 《中国蔬菜》 北大核心 2026年第1期1-13,共13页
“十四五”期间我国在大白菜远缘杂交、泛基因组和驯化演变等相关基础研究取得重大突破,对重要农艺性状的基因进行了定位、克隆和调控机制分析,开发了可用于辅助选择的分子标记;在大白菜种质资源搜集、鉴定、挖掘和创新利用上取得显著进... “十四五”期间我国在大白菜远缘杂交、泛基因组和驯化演变等相关基础研究取得重大突破,对重要农艺性状的基因进行了定位、克隆和调控机制分析,开发了可用于辅助选择的分子标记;在大白菜种质资源搜集、鉴定、挖掘和创新利用上取得显著进展,创制和培育出一批优异新种质和优质多抗新品种。本文对近5年我国在大白菜遗传育种领域取得的进展进行了梳理和总结,讨论分析了目前大白菜育种中存在的主要问题和未来的攻关方向。 展开更多
关键词 大白菜 遗传育种 种质创新 基因克隆/QTL定位 新品种选育 综述
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作物基因资源挖掘:进展与展望
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作者 黎裕 武晶 李春辉 《植物遗传资源学报》 北大核心 2026年第3期439-456,共18页
作物基因资源是支撑现代种业发展和国家粮食安全的战略资源。本文在界定基因资源内涵的基础上,明确其内在特征;提出了作物基因资源挖掘的重点任务与技术路径,并评述了种质资源精准鉴定、基因发掘、等位变异挖掘及其育种利用价值评估等... 作物基因资源是支撑现代种业发展和国家粮食安全的战略资源。本文在界定基因资源内涵的基础上,明确其内在特征;提出了作物基因资源挖掘的重点任务与技术路径,并评述了种质资源精准鉴定、基因发掘、等位变异挖掘及其育种利用价值评估等基因资源挖掘各关键环节在近年来的重要进展,提出了该领域未来的主要发展方向。 展开更多
关键词 作物 基因资源 进展 评述
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香菇降解柠条基质关键基因挖掘
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作者 徐鸿雁 孟清 +4 位作者 李艳艳 刘菲燕 李松龄 张洋 王亚艺 《食用菌学报》 北大核心 2026年第2期1-23,共23页
以杂木屑为对照,探究柠条木屑添加量对香菇(Lentinula edodes)生长发育和营养成分的影响规律,通过加权基因共表达网络分析(weighted gene co-expression network analysis,WGCNA)挖掘香菇不同生长期相关的功能基因,筛选出木质纤维素降... 以杂木屑为对照,探究柠条木屑添加量对香菇(Lentinula edodes)生长发育和营养成分的影响规律,通过加权基因共表达网络分析(weighted gene co-expression network analysis,WGCNA)挖掘香菇不同生长期相关的功能基因,筛选出木质纤维素降解核心基因,为深入解析香菇降解柠条基质的分子机制提供参考。结果表明:N3(30%柠条木屑)组香菇的产量最高,每棒为70.62 g,比对照组高41.2%;N3组的子实体蛋白和灰分含量最高,N2(20%柠条木屑)组子实体中脂肪含量最低,N1(10%柠条木屑)组子实体总氨基酸含量最高;找到5个与香菇生长密切相关的基因模块,其中Red模块(1257个基因)与褐变期正相关,Brown模块(1543个基因)与褐变期负相关,Greenyellow(136个基因)和Blue模块(2062个基因)与子实体期正相关,Turquoise模块(6132个基因)与子实体期负相关。功能基因富集分析发现:褐变期丙酮酸代谢、精氨酸和脯氨酸代谢、柠檬酸循环等代谢途径显著富集;子实体期淀粉和蔗糖代谢、青霉素和头孢菌素生物合成、其他聚糖降解等代谢途径显著富集。选出2个可能与木质纤维素降解相关的基因CYP450和GH,以及ACPT、2-NPD、PTP1B、HLYD、VPS14C、MetE等18个可能与香菇生长发育密切相关的基因。研究结果可为深入解析香菇木质纤维素降解分子机制提供参考。 展开更多
关键词 转录组 加权基因共表达网络分析 关键基因 营养成分 柠条基质
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噬菌体调控宿主菌抗生素耐药性与耐受性的机制及其应用前景
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作者 刘文婷 李晓婷 +5 位作者 陈乐乐 陈柳洁 杨江萍 曹胜亮 李玉保 司振书 《动物医学进展》 北大核心 2026年第4期116-121,共6页
噬菌体是地球上最丰富的生物实体,对微生物群落的结构、全球生态系统的生物地球化学循环以及细菌的进化有着深远影响。作为一种感染并在细菌内复制的病毒,噬菌体可用于治疗细菌感染。相比抗生素,噬菌体具有高度特异性、高效裂解且不干... 噬菌体是地球上最丰富的生物实体,对微生物群落的结构、全球生态系统的生物地球化学循环以及细菌的进化有着深远影响。作为一种感染并在细菌内复制的病毒,噬菌体可用于治疗细菌感染。相比抗生素,噬菌体具有高度特异性、高效裂解且不干扰宿主免疫系统的优势,因此成为了抗击细菌感染的研究热点及减抗替代物的候选者。研究表明,裂解性噬菌体能够增强细菌对抗生素的敏感性,噬菌体与抗生素联合可能产生协同作用。然而,噬菌体的溶原性也可能通过转导或其他机制促使抗生素耐药基因(ARGs)的水平转移,进而推动细菌耐药性的传播。此外,噬菌体也可通过促进生物膜形成增强细菌对抗生素的耐受性。论文综述了噬菌体对抗生素敏感性、耐药性及耐受性的影响及相关机制,探讨了其对细菌适应性的影响,分析了其与抗生素的协同杀菌治疗作用。 展开更多
关键词 噬菌体 抗生素 耐药基因 耐受性 协同作用
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盆周山地猪肌内脂肪沉积关键mRNA和lncRNA的筛选
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作者 龙熙 蓝静 +4 位作者 涂志 张利娟 王可甜 陈四清 郭宗义 《西南大学学报(自然科学版)》 北大核心 2026年第3期11-22,共12页
盆周山地猪是我国西南地区的优良地方猪种之一,其开发利用对西南地区优质猪肉的供给意义重大。为了筛选盆周山地猪肌内脂肪(IMF)沉积关键mRNA和lncRNA,利用转录组测序技术对其高、低IMF含量组的背最长肌进行分析。结果发现,相对于高IMF... 盆周山地猪是我国西南地区的优良地方猪种之一,其开发利用对西南地区优质猪肉的供给意义重大。为了筛选盆周山地猪肌内脂肪(IMF)沉积关键mRNA和lncRNA,利用转录组测序技术对其高、低IMF含量组的背最长肌进行分析。结果发现,相对于高IMF组,低IMF组中有56个mRNA显著上调,27个mRNA显著下调,主要涉及的相关基因有MYH3、MYH13、PDK4、MSTN、FABP3等。GO功能富集分析发现这些差异基因主要参与肌肉系统过程、脂肪酸氧化调控、肌肉器官发育等生物学过程。相对于高IMF组,低IMF组有144个lncRNA显著下调,93个lncRNA显著上调。差异lncRNA靶向调控413个编码基因,GO富集分析发现这些靶基因主要参与骨骼肌系统发育、脂肪细胞分化的正向调控等过程。此外,还发现2个差异显著的lncRNA与3个差异显著的肉质编码基因(FABP3、CTSD、PDK4)存在潜在的靶向调控关系。 展开更多
关键词 盆周山地猪 IMF沉积 候选基因
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有氧运动训练对女性毒品成瘾人群肠道菌群结构的影响
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作者 王航平 张建磊 +1 位作者 白若兰 杨帆 《微生物学杂志》 北大核心 2026年第1期56-66,共11页
为探究有氧运动训练对女性毒品成瘾人群肠道菌群结构的影响,招募100名女性毒品成瘾者为实验对象进行12周有氧运动干预。在运动干预前后分别对受试者进行粪便样本采集,采用16S rRNA基因高通量测序技术分析吸食不同类型毒品女性成瘾人群... 为探究有氧运动训练对女性毒品成瘾人群肠道菌群结构的影响,招募100名女性毒品成瘾者为实验对象进行12周有氧运动干预。在运动干预前后分别对受试者进行粪便样本采集,采用16S rRNA基因高通量测序技术分析吸食不同类型毒品女性成瘾人群运动前后肠道菌群的组成。结果表明,12周有氧运动干预可引起女性毒品成瘾人群肠道菌群物种多样性和优势群落菌属的丰度变化。主成分分析结果显示,运动前后传统毒品运动干预组(MC组)、新型毒品运动干预组(MX组)肠道菌群结构存在显著差异。在纲、目、科水平上,MC组在实验前后物种存在显著差异(P<0.05),运动后纲水平上放线菌(Actinobacteria)和红蝽菌科(Coriobacteriaceae)丰度显著提高。在科、目水平上,MX组实验前后物种存在显著差异(P<0.05),运动后双歧杆菌科(Bifidobacteriaceae)和双歧杆菌目(Bifidobacteriales)丰度显著提高。本研究旨在从肠道微生物角度,为运动干预改善女性毒品成瘾人群身心健康提供参考。 展开更多
关键词 肠道菌群 16S rRNA基因 基因测序 毒品成瘾 有氧运动 菌群结构
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基于WGCNA挖掘调控猪肌内脂肪沉积的关键基因
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作者 赵为民 田紫金 +4 位作者 任守文 王学敏 涂枫 李辉 李碧侠 《中国畜牧兽医》 北大核心 2026年第3期1384-1397,共14页
【目的】挖掘影响猪肌内脂肪(intramuscular fat,IMF)沉积相关的候选基因,以期探索IMF沉积的调控机制。【方法】选取相同饲养条件下不同体重的16头苏山猪,测定其背最长肌IMF含量,并进行转录组测序。利用16个样本的IMF含量和转录组数据,... 【目的】挖掘影响猪肌内脂肪(intramuscular fat,IMF)沉积相关的候选基因,以期探索IMF沉积的调控机制。【方法】选取相同饲养条件下不同体重的16头苏山猪,测定其背最长肌IMF含量,并进行转录组测序。利用16个样本的IMF含量和转录组数据,采用加权基因共表达网络分析(weighted gene co-expression network analysis,WGCNA)鉴定与IMF含量显著相关的基因模块。通过韦恩分析整合高、低IMF组猪背最长肌中差异表达基因(differentially expressed genes,DEGs)和关键基因模块,筛选关键候选基因集并结合基因富集和蛋白质互作(protein-protein interaction,PPI)分析,鉴定调控猪IMF沉积的关键候选基因,并随机选取6个关键基因进行实时荧光定量PCR验证。【结果】WGCNA分析发现,蓝色和绿色模块与IMF含量呈显著相关(P<0.05),分别包含1206(552个hub基因)和440(243个hub基因)个基因。在高、低IMF组间共筛选出877个DEGs,其中358个基因在高IMF组中上调,519个基因下调。韦恩分析显示,蓝色与绿色模块的基因与DEGs重叠的有187个基因,为关键基因集。GO功能富集分析显示,关键基因集显著富集于DNA结合转录因子活性等8个分子功能,RNA聚合酶Ⅱ转录调节复合物等14个细胞组分,细胞内胆固醇转运等22个生物过程。KEGG通路富集分析发现,这些关键基因集参与FoxO信号通路、糖酵解/糖异生、AMPK信号通路、胆固醇代谢和PI3K-Akt信号等通路。PPI和Cytoscape分析发现,MYC、FOXO3、LDHA、IRS2、PGK1、KDR、NPC1、NPC2、BCL6、IL6R、EFNA5、THBS1、INSR、FBP2、GPI为前15个连接度最高的基因,被认为是影响IMF沉积的关键候选基因。实时荧光定量PCR结果显示,MYC、IRS2、FOXO3、LDHA、FBP2和GPI基因在高、低IMF组中的表达趋势与转录组测序结果一致。【结论】本研究基于转录组数据,通过WGCNA、KEGG富集及PPI网络分析,筛选出MYC、FOXO3等15个与苏山猪IMF沉积相关的关键基因,这些基因通过FoxO信号通路、糖酵解/糖异生、AMPK及PI3K-Akt等通路发挥作用,为解析猪IMF沉积的分子机制提供了重要依据。 展开更多
关键词 肌内脂肪 加权基因共表达网络分析 关键基因 转录组测序
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小麦矮秆突变体豫同194的突变位点鉴定及矮化效应分析
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作者 陈晓杰 赵婉 +5 位作者 王宏正 马旭辉 王嘉欢 程仲杰 张建伟 张福彦 《麦类作物学报》 北大核心 2026年第2期199-207,共9页
为明确矮秆突变体豫同194的变异位点、矮秆基因组成及矮化效应,以其亲本周麦18为对照,采用外显子捕捉测序验证其突变真实性并挖掘变异位点,开展矮秆基因分子检测、苗期赤霉素(GA3)敏感性试验及株高与产量性状分析。结果表明,豫同194与周... 为明确矮秆突变体豫同194的变异位点、矮秆基因组成及矮化效应,以其亲本周麦18为对照,采用外显子捕捉测序验证其突变真实性并挖掘变异位点,开展矮秆基因分子检测、苗期赤霉素(GA3)敏感性试验及株高与产量性状分析。结果表明,豫同194与周麦18遗传一致性为99.63%,差异SNP主要富集于2B(52.62%)、5A(11.49%)和2D(6.25%)染色体,其中2B染色体上96.93%的差异位点(253个)集中分布于4个区段(总长38.42Mb)。两者均携带Rht2、Rht9和Rht24基因,豫同194另携带Rht8基因。两者均对外源GA3不敏感,符合Rht2+Rht24组合的赤霉素响应特性。在不同种植条件下豫同194株高均显著低于周麦18(点播降低9.83%,小区降低11.98%),矮化主要源于基部3个节间和倒2节间的显著缩短(降幅12.09%~29.08%);矮化未对穗粒数、千粒重等产量性状产生明显负效应,反而使分蘖成穗率显著提高(点播单株分蘖增加15.5%,小区穗数增加8.63%),增产3.88%。由此可见豫同194作为周麦18矮秆突变体,在协同降低株高与提升产量方面具有潜在应用价值。 展开更多
关键词 小麦 矮秆突变体 变异位点 矮秆基因 赤霉素
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甘薯抗旱QTL的鉴定与候选基因分析
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作者 赵冬兰 肖世卓 +8 位作者 周志林 赵凌霄 戴习彬 张安 王洁 袁蕊 李青莲 王珧 曹清河 《江苏农业学报》 北大核心 2026年第3期485-491,共7页
干旱是限制作物生产最严重的非生物胁迫之一,解析抗旱遗传基础、发掘关键基因与分子标记对甘薯抗旱品种选育具有重要意义。本研究以包含212个子代的F 1群体为试验材料,在新疆干旱环境下进行抗旱表型鉴定。基于甘薯单核苷酸多态性(SNP)... 干旱是限制作物生产最严重的非生物胁迫之一,解析抗旱遗传基础、发掘关键基因与分子标记对甘薯抗旱品种选育具有重要意义。本研究以包含212个子代的F 1群体为试验材料,在新疆干旱环境下进行抗旱表型鉴定。基于甘薯单核苷酸多态性(SNP)遗传图谱,采用复合区间作图法(CIM)鉴定到1个与甘薯抗旱性相关的数量性状基因座(QTL)qDR04-1,其表型贡献率为11.1%。进一步对qDR04-1置信区间进行基因预测与功能注释,筛选出10个抗旱候选基因,功能涉及离子转运、脂质代谢、糖基化修饰、氧化应激响应及WRKY转录调控等逆境适应通路。本研究首次在甘薯中定位到抗旱QTL并系统挖掘了其候选基因,为抗旱分子机制解析与分子育种提供了理论依据。 展开更多
关键词 甘薯 抗旱性 数量性状位点 候选基因
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FBXW7基因对脱氧雪腐镰刀菌烯醇(DON)诱导的猪肠上皮细胞铁死亡的调控
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作者 程金花 崔乐康 +8 位作者 戴超辉 李伟宁 李辉 赵为民 李碧侠 王学敏 廖超 包文斌 付言峰 《江苏农业学报》 北大核心 2026年第1期132-141,共10页
为了明确FBXW7基因在脱氧雪腐镰刀菌烯醇(DON)诱导的猪肠上皮细胞铁死亡过程中的调控作用,本研究用DON处理猪肠上皮细胞系(IPEC-J2)细胞,通过实时荧光定量聚合酶链式反应(qPCR)检测细胞中FBXW7基因与铁死亡相关基因的表达水平,通过基因... 为了明确FBXW7基因在脱氧雪腐镰刀菌烯醇(DON)诱导的猪肠上皮细胞铁死亡过程中的调控作用,本研究用DON处理猪肠上皮细胞系(IPEC-J2)细胞,通过实时荧光定量聚合酶链式反应(qPCR)检测细胞中FBXW7基因与铁死亡相关基因的表达水平,通过基因干扰/过表达技术结合qPCR探究FBXW7基因在DON诱导的IPEC-J2细胞损伤过程中的调控作用。结果表明,与未用DON处理的对照(NC)相比,DON处理IPEC-J2细胞后,细胞活力下降、细胞内活性氧(ROS)水平极显著升高(P<0.01),细胞中FBXW7基因表达水平显著或极显著上调(P<0.05或P<0.01),且铁死亡相关基因表达水平也发生显著或极显著变化(P<0.05或P<0.01)。FBXW7基因过表达抑制了铁死亡激活基因的表达,促进了铁死亡抑制基因的表达,最终缓解了DON诱导的IPEC-J2细胞铁死亡。本研究结果初步揭示过表达FBXW7基因可缓解DON诱导的猪肠上皮细胞铁死亡,进而提高猪对DON的抗性,为利用抗病育种策略制订DON预防和控制新方法提供了理论依据。 展开更多
关键词 FBXW7基因 脱氧雪腐镰刀菌烯醇(DON) 肠上皮细胞 铁死亡
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