Total RNA from leaves of Poapratensis cultivars under drought stress was extracted for reversing transcription to cDNA and then cDNA as template for PCR reaction by designing primer of cds of Hordeum valgare HVA1 drou...Total RNA from leaves of Poapratensis cultivars under drought stress was extracted for reversing transcription to cDNA and then cDNA as template for PCR reaction by designing primer of cds of Hordeum valgare HVA1 drought resistance gene from GenBank. The amplified products were positive recon identified by using procedures of recovery, connection, transformation and enzyme separation. The length of cloned gene sequence was 324 bp, identity reached 79.27% with Barley HVA1 gene that meaned the cloned gene sequence was the partial HVA1 gene of Poapratensis.展开更多
为探究草地早熟禾无融合生殖胚囊发育过程中基因表达谱的变化,本研究利用高通量Illu-mina Hiseq测序技术对‘清水’草地早熟禾无融合生殖子房发育的无孢子起始细胞发生时期(8DBA)和无孢子生殖胚囊发育时期(6DBA、4DBA和2DBA)共4个阶段...为探究草地早熟禾无融合生殖胚囊发育过程中基因表达谱的变化,本研究利用高通量Illu-mina Hiseq测序技术对‘清水’草地早熟禾无融合生殖子房发育的无孢子起始细胞发生时期(8DBA)和无孢子生殖胚囊发育时期(6DBA、4DBA和2DBA)共4个阶段的小穗进行转录组测序。结果显示,不同差异分组(2DBA vs 4DBA、2DBA vs6DBA和2DBA vs 8DBA)共有13575个DEGs,包括7191个上调基因和6384个下调基因。GO富集分析发现,3个差异分组的DEGs显著富集在过氧化氢的响应、蛋白质重折叠、营养水库活动、错误折叠蛋白结合和双糖生物合成等过程中。KEGG通路分析表明,3个差异分组的DEGs显著富集在代谢途径、次生代谢产物的生物合成、淀粉和蔗糖代谢及内质网中的蛋白加工等通路上,在2DBA vs 8DBA分组中发现植物激素信号转导途径的富集。4个时期占比最多的转录因子家族是NAC、AP2/ERF-ERF和MYB-related等。将在4个发育阶段特异性高表达的基因OPR1、ASN2、SAMS2、HSP81-2、PXG4和FPK2作为与‘清水’草地早熟禾无融合生殖胚囊发育相关的候选基因。qRTPCR分析表明,除WOX2在4DBA上调,与RNA-seq的表达存在差异外,其余16个DEGs的表达量变化趋势与高通量测序结果基本一致。展开更多
基金Supported by Committee of Nature Science Foundation of Heilongjiang Province (C0207)
文摘Total RNA from leaves of Poapratensis cultivars under drought stress was extracted for reversing transcription to cDNA and then cDNA as template for PCR reaction by designing primer of cds of Hordeum valgare HVA1 drought resistance gene from GenBank. The amplified products were positive recon identified by using procedures of recovery, connection, transformation and enzyme separation. The length of cloned gene sequence was 324 bp, identity reached 79.27% with Barley HVA1 gene that meaned the cloned gene sequence was the partial HVA1 gene of Poapratensis.
文摘为探究草地早熟禾无融合生殖胚囊发育过程中基因表达谱的变化,本研究利用高通量Illu-mina Hiseq测序技术对‘清水’草地早熟禾无融合生殖子房发育的无孢子起始细胞发生时期(8DBA)和无孢子生殖胚囊发育时期(6DBA、4DBA和2DBA)共4个阶段的小穗进行转录组测序。结果显示,不同差异分组(2DBA vs 4DBA、2DBA vs6DBA和2DBA vs 8DBA)共有13575个DEGs,包括7191个上调基因和6384个下调基因。GO富集分析发现,3个差异分组的DEGs显著富集在过氧化氢的响应、蛋白质重折叠、营养水库活动、错误折叠蛋白结合和双糖生物合成等过程中。KEGG通路分析表明,3个差异分组的DEGs显著富集在代谢途径、次生代谢产物的生物合成、淀粉和蔗糖代谢及内质网中的蛋白加工等通路上,在2DBA vs 8DBA分组中发现植物激素信号转导途径的富集。4个时期占比最多的转录因子家族是NAC、AP2/ERF-ERF和MYB-related等。将在4个发育阶段特异性高表达的基因OPR1、ASN2、SAMS2、HSP81-2、PXG4和FPK2作为与‘清水’草地早熟禾无融合生殖胚囊发育相关的候选基因。qRTPCR分析表明,除WOX2在4DBA上调,与RNA-seq的表达存在差异外,其余16个DEGs的表达量变化趋势与高通量测序结果基本一致。
