We used microsatellite markers to investigate the genetic parameters of three different polyploidy populations of Misgurnus anguillicaudatus from Honghu City, Hubei Province. Polyacrylamide gel electrophoresis banding...We used microsatellite markers to investigate the genetic parameters of three different polyploidy populations of Misgurnus anguillicaudatus from Honghu City, Hubei Province. Polyacrylamide gel electrophoresis banding patterns of diploid（2n）, triploid（3n） and tetraploid loaches（4n） were analyzed with Pop Gen software. A total of 68 alleles were obtained from seven microsatellite loci and the polymorphism information content（PIC） indices were all above 0.5. The average expected mean heterozygosity values（He） were 0.8420, 0.7186 and 0.8521; the average observed mean heterozygosity values（Ho） were 0.9674, 0.9785 and 0.8928; and the HardyWeinberg P values were 0.3078, 0.3151 and 0.3762, for diploid, triploid and tetraploid individuals, respectively. The results indicated that the three populations were highly polymorphic, with no deviations from Hardy-Weinberg equilibrium observed at all the seven microsatellite loci. This indicated a high level of genetic diversity within the populations. A cluster analysis diagram showed that the shortest genetic distance was between diploid and tetraploid loaches and they shared a close phylogenetic relationship. The triploid and tetraploid individuals had the most distant phylogenetic relationship.展开更多
In this paper,a flexible modular“Tetris”microsatellite platform is studied to implement the rapid integration and assembly of microsatellites.The proposed microsatellite platform is fulfilled based on a sandwich ass...In this paper,a flexible modular“Tetris”microsatellite platform is studied to implement the rapid integration and assembly of microsatellites.The proposed microsatellite platform is fulfilled based on a sandwich assembly mode which consists of the isomorphic module structure and the standard mechanical-electric-data-thermal interfaces.The advantages of the sandwich assembly mode include flexible reconfiguration and efficient assembly.The prototype of the sandwich assembly mode is built for verifying the performance and the feasibility of the proposed mechanical-electric-data-thermal interfaces.Finally,an assembly case is accomplished to demonstrate the validity and advantages of the proposed“Tetris”microsatellite platform.展开更多
Based on chicken＇ consensus map issued in 2000, 17 microsatellites near 4 candidate genes such as IGF2, OBR, GDF8 and APOA 1 in 4 chromosomes （chromosome 5, 7, 8 and 24） were chosen for polymorphism analysis and co...Based on chicken＇ consensus map issued in 2000, 17 microsatellites near 4 candidate genes such as IGF2, OBR, GDF8 and APOA 1 in 4 chromosomes （chromosome 5, 7, 8 and 24） were chosen for polymorphism analysis and construction of linkage map. Combining the technique of PCR and the fluorescent semi-automated detection, genome scanning was performed for 440 chickens, which was derived from China Agricultural University chicken resource families within three generations. The individuals of this resource families were genotyped. The results showed that the number of alleles ranged from 4 to 14; heterozygosity （H） of markers was between 0.3116 and 0.9148. Polymorphic information content （PIC） varied from 0.2672 to 0.8679. Microsatellites along with above-mentioned 4 candidate genes doing as general markers were used to construct linkage map. The spans of 4 linkage maps constructed in the part region of chromosome 5, 7, 8 and 24 were 263.5, 79.9, 206.2 and 104.2 cM, respectively. The order of markers was consistent with that of counterpart of reported consensus map. However, The spans of linkage map were larger than that of consensus map. The constructed linkage maps laid the foundation for mapping quantitative trait loci （QTL） responsible for economically important traits in chicken.展开更多
12 cattle microsatellite DNA markers were used for establishing the paternity of 4 Datong Yak calves.The results indicated that paternity can be assigned by use of exclusion method directely when the mother is clearly...12 cattle microsatellite DNA markers were used for establishing the paternity of 4 Datong Yak calves.The results indicated that paternity can be assigned by use of exclusion method directely when the mother is clearly known and data of all likely sires were obtained. The more the alleles of a locus possessed, the more effectively the paternity can be assigned. Not only the microsatellite DNA marker is a promising tool in establishment of yak detail pedigrees, but also can provide us information of reproductive efficiency of the bull(s) based on the numbers of calves it produced in the herd, which will be useful in speeding up the processes of yak genetics improvement.展开更多
Two Chinese domestic yak populations representing the Plateau type and the Huanhu Alpine type were analysed with 12 bovine microsatellite primers.All primer pairs functioned in the yak genome and polymorphism was foun...Two Chinese domestic yak populations representing the Plateau type and the Huanhu Alpine type were analysed with 12 bovine microsatellite primers.All primer pairs functioned in the yak genome and polymorphism was found at all loci.The allele size ranges and frequencies of the two yak populations were similar and there was considerable overlap with the allele size ranges observed in cattle.Data for European cattle breeds was obtained from the Cattle Diversity Database(CaDBase)to interpret the heterozygosity and genetic distance estimates in yak populations.Heterozygosity estimated for the two yak populations was comparable to that of European cattle while Nei's Genetic Distance DA between the two yak populations was less than distances between the most closely related German cattle breeds.Bovine microsatellite primers proved to be a valuable tool for characterization of yak populations.展开更多
Chinese mitten crab （Eriocheir sinensis） is an indigenous and ecologically and economically important species in the Liao River area, but its identification and genetic diversity remain poorly understood. To evaluat...Chinese mitten crab （Eriocheir sinensis） is an indigenous and ecologically and economically important species in the Liao River area, but its identification and genetic diversity remain poorly understood. To evaluate the germplasm resources of this species, samples were collected from these locations： four sub-populations from the Liao River area and one population from the Yangtze River area; one primer was used to distinguish between the Liao River and the Yangtze River crabs. Thirteen loci were used for crab genetic diversity analysis, and basic statistics showed that the collecting samples were purebred in the Liao River area. The average observed heterozygosity （H0） of the Liao River population was 0.5931, and the expected heterozygosity （He） was 0.8064. The polymorphism information content （PIC） was 0.7753, which showed that the Liao River population had high genetic diversity. The genetic differentiation index （FST） averaged 0.0342, meaning a low degree of differentiation; cluster analysis indicated that Hujia （HJ）, Xinli （XL） and Chenjia （CJ） sub-populations were allocated to the same cluster, while Baqiangzi （BQZ） sub-population was isolated. In summary, these data demonstrated that the crabs in the Liao River had high genetic diversity, but low genetic differentiation. Thus, the Liao River population had the potential for breeding selection. Furthermore, this study also provided valuable genetic information for the conservation of Chinese mitten crab.展开更多
Environment and Disasters Monitoring Microsatellite Constellation with high spatial resolution,high temporal resolution and high spectral resolution characteristics was put forward by China.HJ-1B satellite,one of the ...Environment and Disasters Monitoring Microsatellite Constellation with high spatial resolution,high temporal resolution and high spectral resolution characteristics was put forward by China.HJ-1B satellite,one of the first two small optical satellites,had a CCD camera and an infrared camera,which would provide an important new data source for snow monitoring.In the present paper,through analyzing the sensor and data characteristics of HJ-1B,we proposed a new infrared normalized difference snow index(INDSI) referring to the traditional normalized difference snow index(NDSI).The accuracy of these two automatic snow recognition methods was estimated based on a supervised classification method.The accuracy of the traditional NDSI method was 97.761 9% while that of the new INDSI method was 98.617 1%.展开更多
The Nei's improved genetic distance(DA)and gene flow(Nm)were measured using sixteen microsatellite markers.Dendograms based on DA genetic distance using the neighbor-joining(NJ)method and STRUCTURE program were co...The Nei's improved genetic distance(DA)and gene flow(Nm)were measured using sixteen microsatellite markers.Dendograms based on DA genetic distance using the neighbor-joining(NJ)method and STRUCTURE program were constructed to analyze the genetic structure and relationship among 10 Chinese indigenous chicken breeds.The results showed that dendograms of DA genetic distance using the NJ method divided the 10 chicken breeds into two main clusters;one consisted of breeds of low weight body(CHA,TTB,XIA,GUS and BAI),the other contained heavier breeds(LAN,DAG,YOU,XIS and LUY).In the lighter breeds,TIB and CHA clustered together,as did XIA and GUS.In the heavier breeds,XIS and LUY was clustered together in one branch,but LAN,DAG and YOU clustered in independent branches.The results were consistent with Nm estimates among the 10 indigenous chicken breeds.The STRUCTURE program properly inferred the presence of genetic structure despite not pre-defining the origin of individuals.The genetic cluster inferred by STRUCTURE was basically the same as that from the DA distance clustering method.An advantage of the STRUCTURE program was its ability to identify the migrants and admixed individuals in the 10 chicken populations;this could not be achieved by use of the DA distance clustering method.展开更多
Short sequence repeats(microsatellite,SSR) and expressed sequence tags-SSR(EST-SSR) markers were employed to analyze the genetic diversity of natural colored cotton varieties.About
基金Supported by the Natural Science Foundation of China(31272650)the Natural Science Foundation of Liaoning Province(201102019)
文摘We used microsatellite markers to investigate the genetic parameters of three different polyploidy populations of Misgurnus anguillicaudatus from Honghu City, Hubei Province. Polyacrylamide gel electrophoresis banding patterns of diploid（2n）, triploid（3n） and tetraploid loaches（4n） were analyzed with Pop Gen software. A total of 68 alleles were obtained from seven microsatellite loci and the polymorphism information content（PIC） indices were all above 0.5. The average expected mean heterozygosity values（He） were 0.8420, 0.7186 and 0.8521; the average observed mean heterozygosity values（Ho） were 0.9674, 0.9785 and 0.8928; and the HardyWeinberg P values were 0.3078, 0.3151 and 0.3762, for diploid, triploid and tetraploid individuals, respectively. The results indicated that the three populations were highly polymorphic, with no deviations from Hardy-Weinberg equilibrium observed at all the seven microsatellite loci. This indicated a high level of genetic diversity within the populations. A cluster analysis diagram showed that the shortest genetic distance was between diploid and tetraploid loaches and they shared a close phylogenetic relationship. The triploid and tetraploid individuals had the most distant phylogenetic relationship.
基金supported by the National Natural Science Foundation of China(6210333962073261)+1 种基金Shaanxi Natural Science Basic Research Program(2023-JC-YB-569)the Fundamental Research Funds for the Central Universities。
文摘In this paper,a flexible modular“Tetris”microsatellite platform is studied to implement the rapid integration and assembly of microsatellites.The proposed microsatellite platform is fulfilled based on a sandwich assembly mode which consists of the isomorphic module structure and the standard mechanical-electric-data-thermal interfaces.The advantages of the sandwich assembly mode include flexible reconfiguration and efficient assembly.The prototype of the sandwich assembly mode is built for verifying the performance and the feasibility of the proposed mechanical-electric-data-thermal interfaces.Finally,an assembly case is accomplished to demonstrate the validity and advantages of the proposed“Tetris”microsatellite platform.
基金Supported by Program for New Century Excellent Talents in University(NCET-04-0343)National Natural Science Foundation Key Project(30430510)Excellent Young Teachers Program of MOE.People's Republic of China(1985)
文摘Based on chicken＇ consensus map issued in 2000, 17 microsatellites near 4 candidate genes such as IGF2, OBR, GDF8 and APOA 1 in 4 chromosomes （chromosome 5, 7, 8 and 24） were chosen for polymorphism analysis and construction of linkage map. Combining the technique of PCR and the fluorescent semi-automated detection, genome scanning was performed for 440 chickens, which was derived from China Agricultural University chicken resource families within three generations. The individuals of this resource families were genotyped. The results showed that the number of alleles ranged from 4 to 14; heterozygosity （H） of markers was between 0.3116 and 0.9148. Polymorphic information content （PIC） varied from 0.2672 to 0.8679. Microsatellites along with above-mentioned 4 candidate genes doing as general markers were used to construct linkage map. The spans of 4 linkage maps constructed in the part region of chromosome 5, 7, 8 and 24 were 263.5, 79.9, 206.2 and 104.2 cM, respectively. The order of markers was consistent with that of counterpart of reported consensus map. However, The spans of linkage map were larger than that of consensus map. The constructed linkage maps laid the foundation for mapping quantitative trait loci （QTL） responsible for economically important traits in chicken.
文摘12 cattle microsatellite DNA markers were used for establishing the paternity of 4 Datong Yak calves.The results indicated that paternity can be assigned by use of exclusion method directely when the mother is clearly known and data of all likely sires were obtained. The more the alleles of a locus possessed, the more effectively the paternity can be assigned. Not only the microsatellite DNA marker is a promising tool in establishment of yak detail pedigrees, but also can provide us information of reproductive efficiency of the bull(s) based on the numbers of calves it produced in the herd, which will be useful in speeding up the processes of yak genetics improvement.
文摘Two Chinese domestic yak populations representing the Plateau type and the Huanhu Alpine type were analysed with 12 bovine microsatellite primers.All primer pairs functioned in the yak genome and polymorphism was found at all loci.The allele size ranges and frequencies of the two yak populations were similar and there was considerable overlap with the allele size ranges observed in cattle.Data for European cattle breeds was obtained from the Cattle Diversity Database(CaDBase)to interpret the heterozygosity and genetic distance estimates in yak populations.Heterozygosity estimated for the two yak populations was comparable to that of European cattle while Nei's Genetic Distance DA between the two yak populations was less than distances between the most closely related German cattle breeds.Bovine microsatellite primers proved to be a valuable tool for characterization of yak populations.
基金Supported by Open Project Program of Key Laboratory of Freshwater Aquatic Biotechnology and Breeding,Ministry of Agriculture,Heilongjiang Fisheries Research Institute,Chinese Academy of Fishery Sciences(FBB2016-01)
文摘Chinese mitten crab （Eriocheir sinensis） is an indigenous and ecologically and economically important species in the Liao River area, but its identification and genetic diversity remain poorly understood. To evaluate the germplasm resources of this species, samples were collected from these locations： four sub-populations from the Liao River area and one population from the Yangtze River area; one primer was used to distinguish between the Liao River and the Yangtze River crabs. Thirteen loci were used for crab genetic diversity analysis, and basic statistics showed that the collecting samples were purebred in the Liao River area. The average observed heterozygosity （H0） of the Liao River population was 0.5931, and the expected heterozygosity （He） was 0.8064. The polymorphism information content （PIC） was 0.7753, which showed that the Liao River population had high genetic diversity. The genetic differentiation index （FST） averaged 0.0342, meaning a low degree of differentiation; cluster analysis indicated that Hujia （HJ）, Xinli （XL） and Chenjia （CJ） sub-populations were allocated to the same cluster, while Baqiangzi （BQZ） sub-population was isolated. In summary, these data demonstrated that the crabs in the Liao River had high genetic diversity, but low genetic differentiation. Thus, the Liao River population had the potential for breeding selection. Furthermore, this study also provided valuable genetic information for the conservation of Chinese mitten crab.
基金HJ-1 Satellite data Application Research Project(2008A01A1300)National High Technology Research and Development Program(2009AA12Z101)Key Project of Knowledge Innovation Program of Chinese Academy of Sciences(KZCX2-YW-Q03-07)
文摘Environment and Disasters Monitoring Microsatellite Constellation with high spatial resolution,high temporal resolution and high spectral resolution characteristics was put forward by China.HJ-1B satellite,one of the first two small optical satellites,had a CCD camera and an infrared camera,which would provide an important new data source for snow monitoring.In the present paper,through analyzing the sensor and data characteristics of HJ-1B,we proposed a new infrared normalized difference snow index(INDSI) referring to the traditional normalized difference snow index(NDSI).The accuracy of these two automatic snow recognition methods was estimated based on a supervised classification method.The accuracy of the traditional NDSI method was 97.761 9% while that of the new INDSI method was 98.617 1%.
基金supported by the Program of National Technological Basis from Ministry of Science and Technology of China(No.2005DKA21101)the National Natural Science Foundation of China(No.30700572)
文摘The Nei's improved genetic distance(DA)and gene flow(Nm)were measured using sixteen microsatellite markers.Dendograms based on DA genetic distance using the neighbor-joining(NJ)method and STRUCTURE program were constructed to analyze the genetic structure and relationship among 10 Chinese indigenous chicken breeds.The results showed that dendograms of DA genetic distance using the NJ method divided the 10 chicken breeds into two main clusters;one consisted of breeds of low weight body(CHA,TTB,XIA,GUS and BAI),the other contained heavier breeds(LAN,DAG,YOU,XIS and LUY).In the lighter breeds,TIB and CHA clustered together,as did XIA and GUS.In the heavier breeds,XIS and LUY was clustered together in one branch,but LAN,DAG and YOU clustered in independent branches.The results were consistent with Nm estimates among the 10 indigenous chicken breeds.The STRUCTURE program properly inferred the presence of genetic structure despite not pre-defining the origin of individuals.The genetic cluster inferred by STRUCTURE was basically the same as that from the DA distance clustering method.An advantage of the STRUCTURE program was its ability to identify the migrants and admixed individuals in the 10 chicken populations;this could not be achieved by use of the DA distance clustering method.
文摘Short sequence repeats(microsatellite,SSR) and expressed sequence tags-SSR(EST-SSR) markers were employed to analyze the genetic diversity of natural colored cotton varieties.About
