期刊文献+
共找到10篇文章
< 1 >
每页显示 20 50 100
与胃癌发病相关的核心基因筛选及生物学功能分析
1
作者 宋思源 温芳 +8 位作者 黄雯洁 陈晓雪 阮帅 顾苏平 顾培杏 周佳钰 李烨 刘佳彤 舒鹏 《山东医药》 CAS 2021年第30期1-5,共5页
目的运用生物信息学方法筛选与胃癌发病相关的核心基因,并分析其生物学功能。方法①胃癌患者癌组织及健康成人胃组织中表达上调的低甲基化基因、表达上调的低甲基化(致)癌基因、表达下调的高甲基化基因及表达下调的高甲基化抑癌基因筛选... 目的运用生物信息学方法筛选与胃癌发病相关的核心基因,并分析其生物学功能。方法①胃癌患者癌组织及健康成人胃组织中表达上调的低甲基化基因、表达上调的低甲基化(致)癌基因、表达下调的高甲基化基因及表达下调的高甲基化抑癌基因筛选:从基因表达综合数据库中提取基因表达微阵列GSE118916、基因甲基化微阵列GSE25869。通过limma软件包和维恩图筛选胃癌患者及健康成年患者胃组织的差异表达基因和差异表达甲基化基因。从癌基因数据库和肿瘤抑制基因数据库中筛选胃癌的致癌基因和抑癌基因,绘制Venn图筛选得到表达上调的低甲基化基因、表达上调的低甲基化(致)癌基因、表达下调的高甲基化基因及表达下调的高甲基化抑癌基因。②胃癌患者癌组织表达上调的低甲基化基因、表达下调的高甲基化基因的主要基因筛选及生物学功能分析:采用DAVID数据库对表达上调的低甲基化基因、表达下调的高甲基化基因进行基因本体论(GO)分析和基因组百科全书(KEEG)通路富集分析。并导入String数据库,构建蛋白质—蛋白质相互作用网络图,分析蛋白质网络相互作用的主要基因。③胃癌发病的核心基因筛选及验证:采用GEPIA、Oncomine、HPA和cBioPortal数据库从表达上调的低甲基化基因、表达上调的低甲基化(致)癌基因、表达下调的高甲基化基因及表达下调的高甲基化抑癌基因中筛选出与胃癌发病相关的核心基因。并对核心基因进行GO及KEGG富集分析。结果①胃癌患者癌组织中有FN1、COL3A1及COL1A1等110个表达上调的低甲基化基因,其中TAC1、TWIST1、UCHL1、SPARC、GREM1、MEF2C、MAFB等9个基因为表达上调的低甲基化(致)癌基因;有CDH1、FOXA1及KLF4等23个表达下调的高甲基化基因,其中AZGP1、CDH1为表达下调的高甲基化抑癌基因。②表达上调的低甲基化基因的生物过程主要涉及细胞粘附和细胞外基质,表达下调的高甲基化基因的生物过程主要涉及对尼古丁和异种生物代谢过程的反应。表达上调的低甲基化基因在粘着斑、PI3K-Akt信号传导途径和ECM-受体相互作用方面显着富集。表达下调的高甲基化基因在药物代谢—细胞色素P450、化学致癌作用和细胞色素P450异源生物的代谢显著富集。FN1、COL3A1、COL1A1、COL1A2、MMP2等表达上调的低甲基化基因,CDH1、FOXA1及KLF4等表达下调的高甲基化基因,是蛋白质—蛋白质相互作用中的主要基因。③胃癌发病的核心基因为COL1A1、THBS1、COL5A2、COL12A1及CXCR4。发病的核心基因的生物过程主要包括胶原原纤维组织、胶原分解代谢过程。细胞成分主要包括内质网腔、细胞外基质。分子功能包括细胞外基质的结构成分。发病的核心基因主要在ECM-受体相互作用、蛋白质的消化吸收、粘着斑和PI3K-Akt信号传导途径显著富集。结论胃癌发病的核心基因为COL1A1、THBS1、COL5A2、COL12A1及CXCR4。其生物学过程主要包括胶原原纤维组织、胶原分解代谢、内质网腔、细胞外基质、细胞外基质的结构成分。胃癌发病的核心基因主要通过ECM-受体相互作用、蛋白质的消化吸收、粘着斑和PI3K-Akt信号传导途径发挥作用。 展开更多
关键词 胃癌 胃癌基因 胃癌发病核心基因 差异表达基因 基因甲基化 差异表达甲基化基因
在线阅读 下载PDF
胃癌相关基因GCRG213真核表达载体的构建及其对胃癌细胞MKN45的影响
2
作者 高利利 王孟薇 +6 位作者 吴本俨 王珊 杨怡 黄海力 伍银桥 尤纬缔 王卫华 《山东医药》 CAS 北大核心 2008年第41期1-4,共4页
目的研究胃癌相关基因GCRG213正义、反义转染对胃癌细胞MKN45的影响。方法采用分子克隆及基因转染技术将GCRG213基因转入哺乳动物细胞,并结合反义转染技术研究GCRG213基因对胃癌细胞恶性生物学行为的影响。结果GCRG213正向和反向克隆正... 目的研究胃癌相关基因GCRG213正义、反义转染对胃癌细胞MKN45的影响。方法采用分子克隆及基因转染技术将GCRG213基因转入哺乳动物细胞,并结合反义转染技术研究GCRG213基因对胃癌细胞恶性生物学行为的影响。结果GCRG213正向和反向克隆正确插入真核表达载体pcDNA3.1(+);重组子pcDNA3.1-a、pcDNA3.1-b和空载体转染人胃癌细胞系MKN45细胞;正义转染其mRNA的表达上调,而反义转染下调;正义转染加快MKN45细胞生长增殖速度、降低细胞凋亡率,反义转染减慢MKN45细胞生长增殖速度,增加细胞凋亡率。结论胃癌相关基因GCRG213可促进肿瘤细胞生长、分裂和转移,抑制肿瘤细胞的凋亡,可能是一个新发现的恶性肿瘤癌变的促进因素。 展开更多
关键词 胃癌相关基因GCRG213 真核表达 胃癌细胞 基因转染
在线阅读 下载PDF
基于数据库的胃癌相关差异表达基因筛选及生物学功能分析
3
作者 张越时 郭隽馥 《山东医药》 CAS 2020年第27期29-34,共6页
目的基于数据库筛选胃癌相关差异表达基因,分析胃癌相关差异表达基因的生物学功能及相关信号通路,探索胃癌相关核心差异表达基因与胃癌预后的关系。方法从GEO数据库选取胃癌相关基因芯片GSE79973、GSE54129,应用GEO2R分别筛选出两组芯... 目的基于数据库筛选胃癌相关差异表达基因,分析胃癌相关差异表达基因的生物学功能及相关信号通路,探索胃癌相关核心差异表达基因与胃癌预后的关系。方法从GEO数据库选取胃癌相关基因芯片GSE79973、GSE54129,应用GEO2R分别筛选出两组芯片胃癌组织与正常胃黏膜组织的差异表达基因,取交集后得到共有差异表达基因。应用DAVID对差异表达基因进行生物学功能及信号通路分析。采用STRING构建差异表达基因蛋白互作网络,应用Cytoscape软件的MCODE插件筛选胃癌相关核心差异表达基因。对核心差异表达基因与胃癌预后的关系进行分析。结果相对于正常胃黏膜组织,胃癌组织差异表达基因共164个,其中42个上调、122个下调,主要存在于胞外区、蛋白细胞外基质、细胞外基质、细胞外外泌体等部位,主要涉及细胞外基质受体相互作用、局部黏附、蛋白质消化和吸收、细胞色素P450代谢等相关通路。初步筛选出13个胃癌相关核心基因(COL1A2、BGN、THBS2、FN1、THBS1、COL1A1、COL4A1、SPARC、COL11A1、COL6A3、COL12A1、TIMP1、SPP1),除THBS1外,其余12个与胃癌不良预后明显相关(P均<0.05)。结论与正常胃黏膜组织相比,胃癌组织相关差异表达基因共164个,其中42个上调、122个下调,主要在胞外区、蛋白细胞外基质等部位,主要与细胞外基质受体相互作用、局部黏附等相关通路有关;13个胃癌相关核心基因COL1A2、BGN、THBS2等中有12个与胃癌不良预后相关。 展开更多
关键词 胃癌相关基因 胃癌 生物信息学分析 数据库
在线阅读 下载PDF
STUDY OF LOSS OF HETEROZYGOSITY AT DCC AND APC/MCC GENETIC LOCI OF GASTRIC CANCER 被引量:2
4
作者 王东旭 房殿春 +2 位作者 罗元辉 鲁荣 刘为纹 《Chinese Medical Sciences Journal》 CAS CSCD 1999年第2期107-111,共5页
INTRODUCTIONInthecourseofthedevelopmentandprogressionofmalignanttumors,thelossofcertainfragmentsofaspecificc... INTRODUCTIONInthecourseofthedevelopmentandprogressionofmalignanttumors,thelossofcertainfragmentsofaspecificchromosomeregionfr... 展开更多
关键词 loss of heterozygosity DCC gene APC/MCC gene gastric cancer
在线阅读 下载PDF
DOWN-REGULATED EXPRESSION OF PTEN GENE AND LOH OF ITS EPIGENETIC MICROSATELLITES IN GASTRIC CARCINOMA 被引量:1
5
作者 李锦毅 郑华川 +3 位作者 徐蕾 杨雪飞 高红 辛彦 《Chinese Medical Sciences Journal》 CAS CSCD 2003年第4期237-242,共6页
Objective.To investigate PTEN expression and loss of heterozygosity(LOH)of its epigenetic microsatel-lites in gastric carcinoma and explore their roles in tumorigenesis and progression of gastric carcinoma.Methods.LOH... Objective.To investigate PTEN expression and loss of heterozygosity(LOH)of its epigenetic microsatel-lites in gastric carcinoma and explore their roles in tumorigenesis and progression of gastric carcinoma.Methods.LOH of epigenetic microsatellites of PTEN(D10S541,D10S583and D10S1687)was exam-ined in advanced gastric carcinomas(n=56)by PCR-SSCP.The mRNA and protein expressions of PTEN gene were evaluated in normal mucosa(n=56),early(n=11)and advanced carcinomas(n=56)of the stomach using RT?PCR and immunohistochemoistry respectively.PTEN mRNA and protein expressions were compared with clinicopathological staging and lymph node metastasis of tumors.The relationship be-tween PTEN mRNA expression and LOH of microsatellites was discussed,as well as relationship between PTEN mRNA and protein expression.Results.LOH of D10S541,D10S583and D10S1687was found in28.6%(16/56)of advanced gas-tric carcinomas.The positive rates of PTEN expression were80.4%(45/56),45.5%(5/11)and32.1%(18/56)in normal gastric mucosa,early and advanced gastric carcinomas at mRNA level,while78.6%(44/56),36.4%(4/11)and28.6%(16/56)at protein level.PTEN mRNA and protein were less fre-quently expressed in early and advanced gastric carcinomas than normal gastric mucosa(P<0.05).There was negative correlation between PTEN mRNA expression and LOH of microsatellites(P<0.05).PTEN protein expression paralleled to its mRNA expression(P<0.05).The PTEN mRNA and protein expres-sions were negatively correlated with lymph node metastasis of advanced gastric carcinomas(P<0.05).Conclusion.Down?regulated expression of PTEN and frequent LOH of its epigenetic microsatellites might play an important role in gastric carcinogenesis.Reduced PTEN mRNA expression was closely as-sociated with LOH of its epigenetic microsatellites.Altered expression of PTEN might contribute to lymph node metastasis of gastric carcinoma by decreasing cell adhesion and apoptosis,increasing angiogenesis and cell mobility. 展开更多
关键词 PTEN gene microsatellite instability LOH stomach neoplasms
在线阅读 下载PDF
DNA PLOIDY,EXPRESSION OF p53 PROTEIN AND METASTATIC BEHAVIOUR OF GASTRIC CARCINOMA 被引量:3
6
作者 辛彦 赵凤凯 +5 位作者 吴东瑛 王艳萍 徐蕾 BurnneCurran MaryLeader KristinHenry 《Chinese Medical Sciences Journal》 CAS CSCD 1996年第3期147-151,共5页
DNA ploidy of 57 gastric carcinomas with metastases(12 liver,1 adrenal,4 ovary and 48 lymph node) were measured by flow cytometry.DNA anueploidy was significantly related to liver metastases:9 out of 12 gastric carcin... DNA ploidy of 57 gastric carcinomas with metastases(12 liver,1 adrenal,4 ovary and 48 lymph node) were measured by flow cytometry.DNA anueploidy was significantly related to liver metastases:9 out of 12 gastric carcinomas with liver metastases were anueploid(75%) as compared to 13 out of 45(28.8%) of cases without liver metastases(P<0.01);the one gastric carcinoma with adrenal metastasis was also anueploid.DNA ploidy was not related to ovarian or lymph node metastases.Another interesting finding was that all of 3 gastric carcinomas with liver metastases which showed a diploid DNA pattern,expressed p53 protein, while all of 3 carcinomas with liver metastases but no p53 protein expression were anueploid.The expression of p53 protein was not related to ovarian metastases.The results suggested that an anueploid DNA pattern and the expression of p53 protein are both objective markers valuable in predicting high risk potential of metastases to the liver,and that the combined detection of these markers can be a most useful method in the follow-up of Patients with gastric carcinoma in detecting those at high risk of developing metastases following surgical resection.Also the poorer prognosis of Patients with gastric carcinoma showing an anueploid DNA pattern may be related to the development of distant organ metastases through the blood vascular system.Furthermore,the clone of gastric carcinoma cells which accumulate p53protein or show an anueploid DNA pattern may have a causative role in the development of liver(&.adrenal) metastases. 展开更多
关键词 DNA ploidy p53 protein gastric carcinoma
在线阅读 下载PDF
Genetic Basis of Gastric Cancer 被引量:1
7
作者 Yue-wen Gao Chun-hua Zhang +1 位作者 Xing-mei Zuo Xi-zeng Hui 《Chinese Medical Sciences Journal》 CAS CSCD 2016年第3期192-195,共4页
Gastric cancer is the result of multiple risk factors,including environmental factors,genetic factors and the interaction between them.The environmental factors mainly include dietary,Helicobacter pylori infection and... Gastric cancer is the result of multiple risk factors,including environmental factors,genetic factors and the interaction between them.The environmental factors mainly include dietary,Helicobacter pylori infection and family history of gastric cancer.Genetic factors mainly refer to the susceptible genes that cause epigenetic alterations in oncogenes,tumor suppress genes,cell cycle regulators,DNA repair genes and signaling molecules.This paper summarizes the susceptible genes of gastric cancer and explores the genetic basis of it. 展开更多
关键词 gastric cancer genetic factors
在线阅读 下载PDF
PRODUCTION OF PHAGE-DISPLAYED ANTI-IDIOTYPIC ANTIBODY SINGLE CHAIN VARIABLE FRAGMENTS TO MG7 MONOCLONAL ANTIBODY DIRECTED AGAINST GASTRIC CARCINOMA 被引量:1
8
作者 何凤田 聂勇战 +3 位作者 陈宝军 乔太东 韩者艺 樊代明 《Chinese Medical Sciences Journal》 CAS CSCD 2002年第4期215-219,共5页
Objective. To generate phage-displayed anti-idiotypic antibody single chain variable fragments (anti - Id ScFv) to MG7 monoclonal antibody (McAb) directed against gastric carcinoma so as to lay a foundation for develo... Objective. To generate phage-displayed anti-idiotypic antibody single chain variable fragments (anti - Id ScFv) to MG7 monoclonal antibody (McAb) directed against gastric carcinoma so as to lay a foundation for developing anti-Id ScFv vaccine of the cancer.Methods. Balb/c mice were immunized i. p. with MG7 McAb conjugated with keyhole limpet hemocyanin (KLH), and mRNA was isolated from the spleens of the immunized mice. Heavy and light chain (VH and VL) genes of antibody were amplified separately and assembled into ScFv genes with a linker DNA by PCR. The ScFv genes were ligated into the phagemid vector pCANTAB5E and the ligated sample was transformed into competent E. coli TGI. The transformants were infected with M13K07 helper phage to yield recombinant phages displaying ScFv on the tips of M13 phage. After 4 rounds of panning with MG7, the MG7-positive clones were selected by ELISA from the enriched phages. The types of the anti-Id ScFv displayed on the selected phage clones were preliminarily identified by competition ELISA.Results. The VH, VL and ScFv DNAs were about 340 bp, 320 bp and 750 bp respectively. Twenty-four MG7-positive clones were selected from 60 enriched phage clones, among which 5 displayed β or γ type anti-Id ScFv.Conclusion. The anti-Id ScFv to MG7 McAb can be successfully selected by recombinant phage antibody technique, which paves a way for the study of prevention and cure of gastric carcinoma by using anti-Id ScFv. 展开更多
关键词 gastric carcinoma anti-idiotypic antibody IMMUNOTHERAPY
在线阅读 下载PDF
Methylation of the PCDH8 (Protocadherin-8) gene in gastric cancer 被引量:1
9
作者 Zhang Danjie Che Xiangming +3 位作者 Zhao Wei Liao Xinhua Bi Tieqiang Li Haijun 《Journal of Medical Colleges of PLA(China)》 CAS 2012年第1期10-19,共10页
Objective: To investigate the methylation status of the PCDH8 (Protocadherin-8) gene in gastric cancer tissues and find out the relationship between methylation status of the PCDH8 and clinicopathological features in ... Objective: To investigate the methylation status of the PCDH8 (Protocadherin-8) gene in gastric cancer tissues and find out the relationship between methylation status of the PCDH8 and clinicopathological features in gastric cancer patients. Methods: We first investigated the methylation status of the PCDH8 (Protocadherin-8) gene in 65 gastric cancer and detected aberrant promoter methylation in gastric cancers; and then analyzed he relationship between methylation status of the PCDH8 and clinicopathological status with SPSS 13.0 software. Results: We first investigated the methylation status of the PCDH8 (Protocadherin-8) gene in 65 gastric cancer and detected aberrant promoter methylation in 36 of 65 (55.4%) gastric cancers. There was no significant difference in the distribution of patients with methylation or unmethylation of PCDH8 in terms of age, sex, tumor size, distant metastasis, or TNM stage. Methylation of PCDH8 was significantly correlated to negative pathological lymph node metastasis (P=0.038) and tumor differentiation (P=0.01). These two factors were proved to be of prognostic importance. Conclusion: Methylated PCDH8 seems to have a trend for worse prognosis in gastric cancer. However, a further large series of tumor samples and a longer follow-up period are required to elucidate its potential role. 展开更多
关键词 Protocadherin 8 Gene methylation Gastric cancer
在线阅读 下载PDF
EFFECT OF VL AND VH CONSENSUS SEQUENCE SPECIFIC PRIMERS ON THE BINDING AND EXPRESSION OF A MINI MOLECULE ANTIBODY DIRECTED TOWARDS HUMAN GASTRIC CANCER 被引量:1
10
作者 李竞 王琰 +1 位作者 王卓智 董志伟 《Chinese Medical Sciences Journal》 CAS CSCD 2000年第3期133-139,共7页
To construct ScFv and Fab from murine anti gastric cancer monoclonal antibody(mAb)3H11. Methods.At first,3H11 ScFv and Fab were constructed with V genes PCR amplified by degenerate primers for FR1.The bacterial expres... To construct ScFv and Fab from murine anti gastric cancer monoclonal antibody(mAb)3H11. Methods.At first,3H11 ScFv and Fab were constructed with V genes PCR amplified by degenerate primers for FR1.The bacterial expressed 3H11 Ab fragments showed no antigen binding activity.Then,phage antibody library and random mutated library were constructed from 3H11 hybridoma cells and panning selection was performed.Again the identification of positive clone was failed.Finally the N terminal sequences of V regions were resumed to 3H11 original sequences by site directed mutagenesis via PCR. Results.Binding activity to gastric cancer cells was detected only from N terminal sequence corrected 3H11 ScFv and Fab,though the expression of the Ab fragments was not affected.Correction of either VL or VH N terminal sequences could partially resume the antigen binding activity. Conclusion.Sequence changes of V region N terminal introduced by PCR may seriously affect antigen binding without affecting the expression of antibody. 展开更多
关键词 gastric cancer FAB SCFV PCR
在线阅读 下载PDF
上一页 1 下一页 到第
使用帮助 返回顶部