期刊文献+
共找到2篇文章
< 1 >
每页显示 20 50 100
甜菜BTB蛋白家族的挖掘与生物信息学分析
1
作者 刘宇 杨巧 +6 位作者 王晓丹 赵春雷 王希 李彦丽 贾海伦 丁广洲 陈丽 《中国糖料》 2021年第4期9-16,共8页
BTB(Broad-complex,tramtrack,and bric-à-brac)蛋白在植物生长发育、抗逆性、蛋白质泛素化和降解、细胞骨架组成、离子通道及细胞周期调控等方面发挥着重要作用。本研究从甜菜基因组大数据中获得了49个包含BTB结构域的序列,并利... BTB(Broad-complex,tramtrack,and bric-à-brac)蛋白在植物生长发育、抗逆性、蛋白质泛素化和降解、细胞骨架组成、离子通道及细胞周期调控等方面发挥着重要作用。本研究从甜菜基因组大数据中获得了49个包含BTB结构域的序列,并利用生物信息学方法对甜菜BTB蛋白家族进行了系统发育、理化性质、基因结构、保守结构域、染色体定位等分析。结果显示:甜菜BTB家族编码的氨基酸大部分都属于酸性氨基酸,氨基酸数目为139~1120个,翻译的蛋白大部分为亲水性蛋白,可分为9个亚家族(Ankyrin、Armadillo、MATH、NPH3、BACK、TAZ、TPR、BTB-only、Other),在染色体上呈不均匀分布,主要分布在第5~7号染色体上;亚细胞定位的结果发现36个BTB蛋白都位于细胞核,其余的位于细胞膜和叶绿体上;49个BTB蛋白的磷酸化位点数目为3~25个,不同蛋白磷酸化位点数目差异很大,49个BTB蛋白的等电点为4.70~9.51,分子量为15848.66~124344.33 Da;甜菜BTB家族不同亚族的基因结构存在较大差异,不同亚族的内含子数量和长度都不同;预测的二级结构和三级结构结果表明,不同亚家族的二级结构以BTB结构域为主,但不同亚族还包含了不同的结构域;三级结构中不同结构的数量虽存在着差异,但都以α螺旋和β折叠为主。本研究通过对甜菜BTB家族的分析,为阐明甜菜BTB家族基因的功能及其机制奠定基础。 展开更多
关键词 甜菜 BTB蛋白家族 生物信息学分 基因
在线阅读 下载PDF
The Expression Characteristics,Clinical Relevance and Tumor Inhibition of KCNN3 in Gastric Adenocarcinoma
2
作者 ZHAN Zi-Qing JIN Jia-Bei +3 位作者 LI Yu-Xuan SHI Jia-Xin YE Meng JIN Xiao-Feng 《中国生物化学与分子生物学报》 北大核心 2025年第4期560-575,I0003-I0006,共20页
Potassium-calcium activates channel subfamily N member 3(KCNN3/SK3/KCa2.3)is involved in regulating cellular calcium signaling,muscle contraction and neurotransmitter release.Dysregulation of the KCNN3 channel is asso... Potassium-calcium activates channel subfamily N member 3(KCNN3/SK3/KCa2.3)is involved in regulating cellular calcium signaling,muscle contraction and neurotransmitter release.Dysregulation of the KCNN3 channel is associated with the development of various tumors.We use bioinformatics analysis to identify whether KCNN3 regulates the occurrence and development of stomach adenocarcinoma(STAD)as a prognostic target.By analyzing the Human Protein Atlas(HPA)database and The Cancer Genome Atlas(TCGA)database,we found that the protein and mRNA levels of KCNN3 were dramatically reduced in STAD,and TCGA database showed that KCNN3 significantly correlated with the prognosis and clinical features of STAD.In addition,we found that high expression of KCNN3 in STAD reduced the IC 50 of several drugs in STAD cells,suggesting that high expression of KCNN3 correlated with the drug sensitivity of STAD.To investigate the underlying biological mechanism,we identified a potential KCNN3 interaction factor,tumor necrosis factor receptor superfamily member 7(CD27/TNFRSF7),which is expressed at low levels in STAD.RT-qPCR and Western blotting confirmed that KCNN3 and CD27 positively correlated with each other at protein and mRNA levels,and co-immunoprecipitation and immunofluorescence experiments confirmed that the two proteins interact and colocalize in the cytoplasm.Moreover,we confirmed the inhibitory effect of KCNN3 on the proliferation,migration and invasion of human STAD cells in vitro and in vivo through subcutaneous tumorigenesis and cellular experiments.Furthermore,GO/KEGG enrichment analysis showed that KCNN3 was enriched in signaling pathways regulating the immune response and calcium or metal ion transport.Lastly,we verified through cell co-culture,RT-qPCR and CCK8 assays that high expression of KCNN3 can promote the increase of T cell activating factor and the killing effect of T cells on STAD cells.Therefore,our results suggest that KCNN3 is a potential inhibitory factor affecting the occurrence and progression of STAD. 展开更多
关键词 stomach adenocarcinoma(STAD) potassium calcium-activated channel subfamily N member 3(KCNN3/SK3/KCa2.3) tumor necrosis factor receptor superfamily member 7(CD27/TNFRSF7) drug sensitivity bioinformatics analysis
在线阅读 下载PDF
上一页 1 下一页 到第
使用帮助 返回顶部