A novel docking algorithm based on the geometric match is proposed for protein phage peptide complexes. The radii of gyration of protein phage peptide complexes are used as the criterion of geometric match on the inte...A novel docking algorithm based on the geometric match is proposed for protein phage peptide complexes. The radii of gyration of protein phage peptide complexes are used as the criterion of geometric match on the interface, which can be used to screen out the ligand structures with a good geometry fit without any prior description for the contact surface. The energy is evaluated for the structures with a good geometry fit. The algorithm is used to calculate the rigid and flexible docking of four protein phage peptide complexes and predict successfully the native like structures of phage peptides.展开更多
In this paper, some similarity reductions of the combined KdV-mKdV equation are given by using both the direct method introduced by Clarkson and Kruskal and the classical Lie aproach by Lakshmanan and Kaliappan. The s...In this paper, some similarity reductions of the combined KdV-mKdV equation are given by using both the direct method introduced by Clarkson and Kruskal and the classical Lie aproach by Lakshmanan and Kaliappan. The similarity solutions obtained by the classical Lie approach is only the special case of that obtained by the direct method.展开更多
文摘A novel docking algorithm based on the geometric match is proposed for protein phage peptide complexes. The radii of gyration of protein phage peptide complexes are used as the criterion of geometric match on the interface, which can be used to screen out the ligand structures with a good geometry fit without any prior description for the contact surface. The energy is evaluated for the structures with a good geometry fit. The algorithm is used to calculate the rigid and flexible docking of four protein phage peptide complexes and predict successfully the native like structures of phage peptides.
文摘In this paper, some similarity reductions of the combined KdV-mKdV equation are given by using both the direct method introduced by Clarkson and Kruskal and the classical Lie aproach by Lakshmanan and Kaliappan. The similarity solutions obtained by the classical Lie approach is only the special case of that obtained by the direct method.
