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我校医学院附属第二医院发现白血病发病基因
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《浙江大学学报(医学版)》 CAS CSCD 2006年第1期107-107,共1页
关键词 人白血病细胞系 附属第二医院 医学院 发病基因 SHP-2 人血细胞 白血病患者 基因序列 过度表达 异常分布
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与胃癌发病相关的核心基因筛选及生物学功能分析
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作者 宋思源 温芳 +8 位作者 黄雯洁 陈晓雪 阮帅 顾苏平 顾培杏 周佳钰 李烨 刘佳彤 舒鹏 《山东医药》 CAS 2021年第30期1-5,共5页
目的运用生物信息学方法筛选与胃癌发病相关的核心基因,并分析其生物学功能。方法①胃癌患者癌组织及健康成人胃组织中表达上调的低甲基化基因、表达上调的低甲基化(致)癌基因、表达下调的高甲基化基因及表达下调的高甲基化抑癌基因筛选... 目的运用生物信息学方法筛选与胃癌发病相关的核心基因,并分析其生物学功能。方法①胃癌患者癌组织及健康成人胃组织中表达上调的低甲基化基因、表达上调的低甲基化(致)癌基因、表达下调的高甲基化基因及表达下调的高甲基化抑癌基因筛选:从基因表达综合数据库中提取基因表达微阵列GSE118916、基因甲基化微阵列GSE25869。通过limma软件包和维恩图筛选胃癌患者及健康成年患者胃组织的差异表达基因和差异表达甲基化基因。从癌基因数据库和肿瘤抑制基因数据库中筛选胃癌的致癌基因和抑癌基因,绘制Venn图筛选得到表达上调的低甲基化基因、表达上调的低甲基化(致)癌基因、表达下调的高甲基化基因及表达下调的高甲基化抑癌基因。②胃癌患者癌组织表达上调的低甲基化基因、表达下调的高甲基化基因的主要基因筛选及生物学功能分析:采用DAVID数据库对表达上调的低甲基化基因、表达下调的高甲基化基因进行基因本体论(GO)分析和基因组百科全书(KEEG)通路富集分析。并导入String数据库,构建蛋白质—蛋白质相互作用网络图,分析蛋白质网络相互作用的主要基因。③胃癌发病的核心基因筛选及验证:采用GEPIA、Oncomine、HPA和cBioPortal数据库从表达上调的低甲基化基因、表达上调的低甲基化(致)癌基因、表达下调的高甲基化基因及表达下调的高甲基化抑癌基因中筛选出与胃癌发病相关的核心基因。并对核心基因进行GO及KEGG富集分析。结果①胃癌患者癌组织中有FN1、COL3A1及COL1A1等110个表达上调的低甲基化基因,其中TAC1、TWIST1、UCHL1、SPARC、GREM1、MEF2C、MAFB等9个基因为表达上调的低甲基化(致)癌基因;有CDH1、FOXA1及KLF4等23个表达下调的高甲基化基因,其中AZGP1、CDH1为表达下调的高甲基化抑癌基因。②表达上调的低甲基化基因的生物过程主要涉及细胞粘附和细胞外基质,表达下调的高甲基化基因的生物过程主要涉及对尼古丁和异种生物代谢过程的反应。表达上调的低甲基化基因在粘着斑、PI3K-Akt信号传导途径和ECM-受体相互作用方面显着富集。表达下调的高甲基化基因在药物代谢—细胞色素P450、化学致癌作用和细胞色素P450异源生物的代谢显著富集。FN1、COL3A1、COL1A1、COL1A2、MMP2等表达上调的低甲基化基因,CDH1、FOXA1及KLF4等表达下调的高甲基化基因,是蛋白质—蛋白质相互作用中的主要基因。③胃癌发病的核心基因为COL1A1、THBS1、COL5A2、COL12A1及CXCR4。发病的核心基因的生物过程主要包括胶原原纤维组织、胶原分解代谢过程。细胞成分主要包括内质网腔、细胞外基质。分子功能包括细胞外基质的结构成分。发病的核心基因主要在ECM-受体相互作用、蛋白质的消化吸收、粘着斑和PI3K-Akt信号传导途径显著富集。结论胃癌发病的核心基因为COL1A1、THBS1、COL5A2、COL12A1及CXCR4。其生物学过程主要包括胶原原纤维组织、胶原分解代谢、内质网腔、细胞外基质、细胞外基质的结构成分。胃癌发病的核心基因主要通过ECM-受体相互作用、蛋白质的消化吸收、粘着斑和PI3K-Akt信号传导途径发挥作用。 展开更多
关键词 胃癌 胃癌基因 胃癌发病核心基因 差异表达基因 基因甲基化 差异表达甲基化基因
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INHIBITORY ROLE OF TRANSCRIPTION FACTOR COUP-TFII IN EXPRESSION OF HTERT IN HELA CELLS 被引量:2
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作者 QiangWang Zeng-liangBai: +2 位作者 LiXuan LinHou BoZhang 《Chinese Medical Sciences Journal》 CAS CSCD 2004年第3期157-163,共7页
To clone and identify the proteins involved in regulating the transcription of hTERT and study the role of genes in both hTERT transcription and telomerase activity. Methods The full cDNA of COUP-TFII was clon... To clone and identify the proteins involved in regulating the transcription of hTERT and study the role of genes in both hTERT transcription and telomerase activity. Methods The full cDNA of COUP-TFII was cloned from HeLa cDNA library by hTERT promoter-based yeast one-hybrid assay and then in-frame inserted into His-tag fusion expression vector pEK318. The His-tag COUP-TFII fusion proteins were purified by Ni-NTA chromatography. The interaction of COUP-TFII with hTERT promoter in vitro was identified by electrophoretic mobility shift assay and Footprint. The role of COUP-TFII in both hTERT transcription and telomerase activity were probed through Luciferase reporter assay, Northern blot, and TRAP-PCR ELISA. Results COUP-TFII could firmly bind to the downstream E-box and the other two binding sites in hTERT promoter. Luciferase reporter assay indicated COUP-TFII could suppress hTERT promoter activity and stable introduction of COUP-TFII into HeLa cells also decreased both endogenous hTERT transcription and telomerase activity. Conclusion The human COUP-TFII can firmly bind to hTERT promoter, and inhibit telomerase activity through decreasing hTERT transcription. It will greatly facilitate understanding of telomerase regulation in normal and cancer cells 展开更多
关键词 COUP-TFII HTERT TELOMERASE yeast one-hybrid assay transcription regulation
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Significantly reduced function of T cells in patients with acute arterial thrombosis 被引量:4
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作者 Wen-Wen YAN Kun-Shan ZHANG Qiang-Lin DUAN Le-Min WANG 《Journal of Geriatric Cardiology》 SCIE CAS CSCD 2015年第3期287-293,共7页
Objectives To explore the intrinsic factors related to the pathogenesis of acute arterial thrombosis (AAT) and to elucidate the patho- genesis of AAT on the basis of differentially expressed genes. Methods Patients ... Objectives To explore the intrinsic factors related to the pathogenesis of acute arterial thrombosis (AAT) and to elucidate the patho- genesis of AAT on the basis of differentially expressed genes. Methods Patients with acute myocardial infarction (AMI), stable angina (SA) and healthy controls (n = 20 per group) were recruited, and the whole human genome microarray analysis was performed to detect the differentially expressed genes among these subjects. Results Patients with AMI had disease-specific gene expression pattern. Biological functional analysis showed the function of T cells was significantly reduced, the mitochondrial metabolism significantly decreased, the ion metabolism was abnormal, the cell apoptosis and inflammatory reaction increased, the phagocytosis elevated, the neutrophil-mediated immunity increased and the post-traumatic repair of cells and tissues increased in AMI patients. The biological function in SA group and healthy controis remained stable and was comparable. Conclusions The reduced function ofT cell gene models in AAT showed the dysfunction of the immune system. The pathogenesis of AAT may be related to the inflammatory reaction after arterial intima infection caused by potential pathogenic microorganisms. 展开更多
关键词 Acute arterial thrombosis Gene expression pattern Myocardial infarction Stable angina
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AN ASSOCIATION STUDY BETWEEN ESSENTIAL HYPERTENSION AND HLA-DRB1 ALLELES 被引量:1
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作者 陶贞寅 赵岩 +6 位作者 朱席林 朱克 余国平 吴卫平 董怡 刘力生 邱长春 《Chinese Medical Sciences Journal》 CAS CSCD 1995年第2期70-72,共3页
It is well established that genetic and environmental factors are involved in the etiology of essential hypertension(EH). Previous studies have suggested that at least one of the HLA genes is responsible for the genet... It is well established that genetic and environmental factors are involved in the etiology of essential hypertension(EH). Previous studies have suggested that at least one of the HLA genes is responsible for the genetic susceptibility to EH. Our aim in the present study was to investigate this issue in China by the PCR-SSP HLA-DRB1 typing method. The results showed an increased frequency of HLA-DR2 and a decreased frequency of HLA-DR7 with EH patients compared with controls. We consider that HLA-DR2 may represent a marker for susceptibility to FH in the North Chinese population. 展开更多
关键词 essential hypertension HIA-DR generic typing
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THE ASSOCIATION BETWEEN TUMOR NECROSIS FACTORαGENE POLYMORPHISM AND ASTHMA 被引量:1
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作者 高金明 林耀广 +3 位作者 邱长春 刘怡雯 马毅 刘英 《Chinese Medical Sciences Journal》 CAS CSCD 2003年第4期248-253,共6页
Objective.In this study,we investigated the hypothesis that tumor necrosis factor(TNF)α-308gene polymorphism might be of the genetic predisposition to asthma and asthma phenotypes.Methods.TNFα-308gene polymorphism w... Objective.In this study,we investigated the hypothesis that tumor necrosis factor(TNF)α-308gene polymorphism might be of the genetic predisposition to asthma and asthma phenotypes.Methods.TNFα-308gene polymorphism was genotyped in221random unrelated Northern Chinese population(comprising125asthmatics and96healthy controls)and52individuals from12asthmatic families with Han ethnic by using polymerase chain reaction(PCR)-restriction fragment length polymor-phism(RFLP).Methacholine(Mch)broncho-challenge test,bronchial reversibility test and lung function were underwent in all asthmatics.Results.TNFα-3082homozygosity was present at a significantly higher frequency in asthmatics than that in controls(20.8%vs11.4%,P<0.05,OR2.259),the TNF allele2was also higher in asthmatics compared with controls(0.42vs0.33,P<0.01).TNFα-3082homozygosity was an weak independent risk factor for asthma etiology(OR0.226,P<0.05).Moreover,patients carrying TNFα-3082homozy-gosity had less responsive to inhaledβ 2 -agonist in20minutes than patients carrying other two genotypes(24.1%vs29.5%vs38.8%,P<0.05).Linkage analysis didn’t support that TNFαgene was linked to asthma (Likelihood of odds,LOD<1)based on familial data.Conclusion These results suggest that TNFα-3082homozygosity may be of a component contribut-ing to the genetic predisposition to asthma ,and airway responsiveness toβ2 -agonist. 展开更多
关键词 tumor necrosis factor ASTHMA GENETIC
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