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小串链霉菌XG40全基因组测序及序列分析
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作者 赖宝春 戴瑞卿 +2 位作者 曾天宝 陈淑妹 姚锦爱 《热带作物学报》 CSCD 北大核心 2023年第9期1754-1765,共12页
小串链霉菌(Streptomyces catenulae)XG40是一株对蜜柚黑斑病等真菌病害具有较好拮抗作用的生防放线菌。本研究通过第三代PacBio全基因组测序平台,对小串链霉菌XG40进行全基因组测序和分析,共获得3个contigs,包含1个染色体DNA和2个质粒D... 小串链霉菌(Streptomyces catenulae)XG40是一株对蜜柚黑斑病等真菌病害具有较好拮抗作用的生防放线菌。本研究通过第三代PacBio全基因组测序平台,对小串链霉菌XG40进行全基因组测序和分析,共获得3个contigs,包含1个染色体DNA和2个质粒DNA,其基因组全长为9772324 bp,GC含量为70.58%,蛋白编码基因8074个,占整个基因组的96.41%。利用antiSMASH软件,预测到46个次级代谢产物合成基因簇,其中包含聚酮合成酶(PKS)和非核糖体肽合成酶(NRPS)的基因簇共有24个,占总基因簇数量的52.17%。有7个基因簇与已知基因簇(desferrioxamin B、pristinol、Neoantimyci、2-methylisoborneol、nigericin、ectoine、geosmin)的相似性为100%,4个基因簇与已知基因簇(miharamycin A/B、SW-163C/E/F/G/UK-63598、gilvocarcin V、coelibactin)的相似性在80%以上,比较分析发现该菌株具备一定的合成尼日菌素和褐黄癌菌素V等抗菌物质的能力。共线性分析表明XG40与根霉链霉菌(S.rhizosphaericus)DSM41760、马来西亚链霉菌(S.malaysiensis)DSM14702、黑孢链霉菌(S.melanosporofaciens)DSM 40318和(S.himastatinicus)ATCC 53653四株链霉基因组之间存在插入和缺失、倒位、易位等基因组重排事件。该研究结果为深入挖掘XG40生防潜力,开发可用于农业生物防治的次级代谢产物提供理论基础。 展开更多
关键词 小串链霉菌 全因组测序 次级代谢合成基因簇 比较基因分析
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Genome Sequencing,Probiotic Analysis,and Oxalate Degradation Modification of Limosilactobacillus reuteri Q35
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作者 NIU Dong-Yu KONG Ling-Hui +1 位作者 LIU Xiang-Yong QIN Jia-Yang 《中国生物化学与分子生物学报》 CAS CSCD 北大核心 2024年第11期1585-1595,共11页
Limosilactobacillus reuteri is a microbe intricately linked to humans and animal health.A thorough assessment of its safety and potential benefits is imperative prior to its application in human and animals.In this in... Limosilactobacillus reuteri is a microbe intricately linked to humans and animal health.A thorough assessment of its safety and potential benefits is imperative prior to its application in human and animals.In this investigation,we performed a comprehensive analysis encompassing genome sequencing,genomic analysis,and phenotypic characterization of L.reuteri Q35,an exceptionally proficient producer of reuterin.The whole genome sequencing results showed that the complete genome sequence spans 2145158 bp with a GC content of 38.9%and encompasses 2121 genes.Initial identification of antibiotic-resistant genes,virulence factors,and toxin-coding genes in the genome substantiated the strain’s low-risk status.Subsequent tests for antibiotic resistance,acute oral toxicology,and hemolysis further confirmed its elevated safety level.The genome of L.reuteri Q35 was found to contain genes associated with adhesion and stress tolerance.Following exposure to artificial gastric juice and bile salt,the strain exhibited a higher survival rate and demonstrated a strong scavenging ability for hydroxyl free radicals in antioxidant capacity tests.These findings suggested that L.reuteri Q35 possesses unique probiotic properties.Additionally,the genome of strain Q35 harbors three truncated oxaloyl-CoA decarboxylase genes(oxc1,oxc2 and oxc3),overexpression of which resulted in a significant increase in ammonium oxalate degradation from 29.5%to 48.8%.These findings highlight that L.reuteri Q35 exhibits both favorable safety characteristics alongside beneficial properties,making it a promising candidate for treating metabolic disorders such as hyperoxaluria. 展开更多
关键词 Limosilactobacillus reuteri genomic analysis SAFETY probiotic oxalate degradation
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