Rice bacterial leaf brown spot disease caused by Pseudomonas syringae pv.syringae(Pss)is a major disease on rice.In recent years,Pss has emerged worldwide,seriously affecting rice production.It is very important to es...Rice bacterial leaf brown spot disease caused by Pseudomonas syringae pv.syringae(Pss)is a major disease on rice.In recent years,Pss has emerged worldwide,seriously affecting rice production.It is very important to establish a rapid detection method of Pss for the diagnosis and prevention of this disease.In order to robust and accurately diagnose the rice bacterial leaf brown spot disease in the field and laboratory,an assay system for the Pss was developed in this study,and the specific sequence of hrcN was used as the target,based on loop-mediated isothermal amplification(LAMP).The best detection system was MgSO 48 mmol·L^(-1),Bst DNA polymerase 8 U,dNTP 1.4 mmol·L^(-1),the ratio of internal and outer primers was 2:1,the reaction temperature was 63℃,the reaction time was 45 min,and the lowest sensitivity was 104 CFU·mL^(-1).This results provided an accurate and robust method for laboratory and field diagnosis of bacterial leaf brown spot disease of rice.展开更多
When the loop-mediated isothermal amplification(LAMP)assay is used for detecting target genes,DNA extraction is unnecessary in many cases.Simple pretreatment(e.g.heating)is enough to obtain rather sensitive responses....When the loop-mediated isothermal amplification(LAMP)assay is used for detecting target genes,DNA extraction is unnecessary in many cases.Simple pretreatment(e.g.heating)is enough to obtain rather sensitive responses.Even test samples without any pretreatment can be used as template.This feature suggests that LAMP is superior to PCR in developing point-of-care test strategies.In this study,using Stx1 gene from E.coli as model,we verified that viable cells,dead cells and extracellular DNA could function as template in the LAMP assay.In the incubation at 63℃,viable bacteria in the LAMP reaction mixture lysed completely within 2 min,providing DNA template for nucleic acid amplification.The Stx1 gene in diluted culture medium,spiked tap water,spiked seawater and real seawater all could be detected,with or without the step of DNA extraction.We found that the complex substances in real sample(e.g.natural seawater)exhibited considerable inhibitory effect on the sensitivity of the LAMP assay.These outcomes are meaningful for building a point-of-care strategy by employing the LAMP assay for environmental monitoring,bio-resource surveys,food safety,etc.in particular those based on environmental DNA.展开更多
为探究环等温扩增技术(LAMP)在鲑科鱼类物种鉴定方面的应用,以大西洋鲑为研究对象,针对其线粒体CR区段设计特异性的LAMP引物,并通过单因素试验和正交试验研究反应体系中d NTP Mix、Mg^(2+)、甜菜碱终浓度对LAMP扩增结果的影响。结果表明...为探究环等温扩增技术(LAMP)在鲑科鱼类物种鉴定方面的应用,以大西洋鲑为研究对象,针对其线粒体CR区段设计特异性的LAMP引物,并通过单因素试验和正交试验研究反应体系中d NTP Mix、Mg^(2+)、甜菜碱终浓度对LAMP扩增结果的影响。结果表明,大西洋鲑LAMP扩增的最优条件为:引物SS-CR-F3/SS-CR-B3各0.2 m M,SS-CR-FIP/SS-CR-BIP各1.6 m M,dNTP Mix 1.4 m M,Mg^(2+)6 m M,甜菜碱0.8M,Bst DNA聚合酶8 U,扩增温度为65℃,反应时间60 min。在此条件下LAMP扩增产物电泳检测特异性强、稳定性好,对大西洋鲑DNA的检出限达0.01 ng·μL^(-1),并可对混合样本进行检测。本研究结果为大西洋鲑快速物种鉴定提供了一种重要技术手段,该技术可应用于鲑科鱼类物种鉴别的日常检验检疫和市场监管工作中。展开更多
利用DNA环介导恒温核酸扩增法(loop-mediated isothermal amplification of DNA,LAMP)设计一对外引物和一对内引物,通过引物特异性识别tlh基因上的六个独立区域来快速检测副溶血弧菌。同时将检测结果与PCR方法进行比较。结果表明,LAMP...利用DNA环介导恒温核酸扩增法(loop-mediated isothermal amplification of DNA,LAMP)设计一对外引物和一对内引物,通过引物特异性识别tlh基因上的六个独立区域来快速检测副溶血弧菌。同时将检测结果与PCR方法进行比较。结果表明,LAMP反应在65℃恒温条件60min内完成,凝胶电泳呈现梯型条带;肉眼观察阳性结果出现白色混浊现象,添加1×SYBRGreenI荧光染料后,绿色的阳性结果很明显区别于橙色阴性结果;LAMP方法的最低检出限为10CFU/ml,PCR方法为103CFU/ml,LAMP方法检测灵敏度是PCR方法的100倍。因此,LAMP方法用于快速检测副溶血弧菌具有检测过程简单、反应结果肉眼即辨别并且灵敏度高特异性强的特点。实验装置简便,能够提供稳定热源即可,所以LAMP方法特别适合于现场快速诊断。展开更多
根据巴西坚果2S白蛋白基因序列,利用设计软件Primer Explorer Version 4设计并筛选了食品过敏原巴西坚果的环介导等温扩增引物,对反应体系和反应条件进行了优化,建立了巴西坚果的环介导等温扩增检测方法,结果判断可采用实时荧光法和荧...根据巴西坚果2S白蛋白基因序列,利用设计软件Primer Explorer Version 4设计并筛选了食品过敏原巴西坚果的环介导等温扩增引物,对反应体系和反应条件进行了优化,建立了巴西坚果的环介导等温扩增检测方法,结果判断可采用实时荧光法和荧光染料终点显色法。以澳洲坚果、开心果、碧根果等17种常见坚果来验证方法的特异性;将巴西坚果DNA进行梯度稀释后验证方法的灵敏度;将0.5%、1%和1.5%3个浓度梯度的巴西坚果DNA重复检测20次来验证方法的稳定性。结果表明,本方法能够特异、灵敏、稳定地检测食品中的巴西坚果成分,检测低限为0.5%。此外,对7种市售食品样品的检测结果表明,该方法与食品标签标示的过敏原成分结果吻合率为100%,假阳性率和假阴性率均为0%。展开更多
根据澳洲坚果豌豆蛋白AMP2基因序列,利用设计软件Primer Explorer Version 4设计并筛选了食品过敏原澳洲坚果的环介导等温扩增引物,对反应体系和反应条件进行优化,建立澳洲坚果的环介导等温扩增检测方法,结果判断可采用实时荧光法和荧...根据澳洲坚果豌豆蛋白AMP2基因序列,利用设计软件Primer Explorer Version 4设计并筛选了食品过敏原澳洲坚果的环介导等温扩增引物,对反应体系和反应条件进行优化,建立澳洲坚果的环介导等温扩增检测方法,结果判断可采用实时荧光法和荧光染料终点显色法。对该方法进行了特异性、灵敏度、稳定性评价,结果显示:该方法能够特异性、灵敏、稳定地检测食品中的澳洲坚果成分,检测低限为0.5%。此外,对7种市售食品样品的检测结果表明,该方法与食品标签标示的过敏原成分结果吻合率为100%,假阳性率和假阴性率均为0,在市售食品的过敏原成分检测上较商业化快速检测试纸条更加稳定可靠。展开更多
基金Supported by the Natural Science Foundation of Heilongjiang Province(Topic C2017032)Heilongjiang Province Applied Technology Research and Development Program(Topic GA19B104)the National Key Research and Development Program(Topic 2018YFD0300105)。
文摘Rice bacterial leaf brown spot disease caused by Pseudomonas syringae pv.syringae(Pss)is a major disease on rice.In recent years,Pss has emerged worldwide,seriously affecting rice production.It is very important to establish a rapid detection method of Pss for the diagnosis and prevention of this disease.In order to robust and accurately diagnose the rice bacterial leaf brown spot disease in the field and laboratory,an assay system for the Pss was developed in this study,and the specific sequence of hrcN was used as the target,based on loop-mediated isothermal amplification(LAMP).The best detection system was MgSO 48 mmol·L^(-1),Bst DNA polymerase 8 U,dNTP 1.4 mmol·L^(-1),the ratio of internal and outer primers was 2:1,the reaction temperature was 63℃,the reaction time was 45 min,and the lowest sensitivity was 104 CFU·mL^(-1).This results provided an accurate and robust method for laboratory and field diagnosis of bacterial leaf brown spot disease of rice.
文摘When the loop-mediated isothermal amplification(LAMP)assay is used for detecting target genes,DNA extraction is unnecessary in many cases.Simple pretreatment(e.g.heating)is enough to obtain rather sensitive responses.Even test samples without any pretreatment can be used as template.This feature suggests that LAMP is superior to PCR in developing point-of-care test strategies.In this study,using Stx1 gene from E.coli as model,we verified that viable cells,dead cells and extracellular DNA could function as template in the LAMP assay.In the incubation at 63℃,viable bacteria in the LAMP reaction mixture lysed completely within 2 min,providing DNA template for nucleic acid amplification.The Stx1 gene in diluted culture medium,spiked tap water,spiked seawater and real seawater all could be detected,with or without the step of DNA extraction.We found that the complex substances in real sample(e.g.natural seawater)exhibited considerable inhibitory effect on the sensitivity of the LAMP assay.These outcomes are meaningful for building a point-of-care strategy by employing the LAMP assay for environmental monitoring,bio-resource surveys,food safety,etc.in particular those based on environmental DNA.
文摘为探究环等温扩增技术(LAMP)在鲑科鱼类物种鉴定方面的应用,以大西洋鲑为研究对象,针对其线粒体CR区段设计特异性的LAMP引物,并通过单因素试验和正交试验研究反应体系中d NTP Mix、Mg^(2+)、甜菜碱终浓度对LAMP扩增结果的影响。结果表明,大西洋鲑LAMP扩增的最优条件为:引物SS-CR-F3/SS-CR-B3各0.2 m M,SS-CR-FIP/SS-CR-BIP各1.6 m M,dNTP Mix 1.4 m M,Mg^(2+)6 m M,甜菜碱0.8M,Bst DNA聚合酶8 U,扩增温度为65℃,反应时间60 min。在此条件下LAMP扩增产物电泳检测特异性强、稳定性好,对大西洋鲑DNA的检出限达0.01 ng·μL^(-1),并可对混合样本进行检测。本研究结果为大西洋鲑快速物种鉴定提供了一种重要技术手段,该技术可应用于鲑科鱼类物种鉴别的日常检验检疫和市场监管工作中。
文摘利用DNA环介导恒温核酸扩增法(loop-mediated isothermal amplification of DNA,LAMP)设计一对外引物和一对内引物,通过引物特异性识别tlh基因上的六个独立区域来快速检测副溶血弧菌。同时将检测结果与PCR方法进行比较。结果表明,LAMP反应在65℃恒温条件60min内完成,凝胶电泳呈现梯型条带;肉眼观察阳性结果出现白色混浊现象,添加1×SYBRGreenI荧光染料后,绿色的阳性结果很明显区别于橙色阴性结果;LAMP方法的最低检出限为10CFU/ml,PCR方法为103CFU/ml,LAMP方法检测灵敏度是PCR方法的100倍。因此,LAMP方法用于快速检测副溶血弧菌具有检测过程简单、反应结果肉眼即辨别并且灵敏度高特异性强的特点。实验装置简便,能够提供稳定热源即可,所以LAMP方法特别适合于现场快速诊断。
文摘根据巴西坚果2S白蛋白基因序列,利用设计软件Primer Explorer Version 4设计并筛选了食品过敏原巴西坚果的环介导等温扩增引物,对反应体系和反应条件进行了优化,建立了巴西坚果的环介导等温扩增检测方法,结果判断可采用实时荧光法和荧光染料终点显色法。以澳洲坚果、开心果、碧根果等17种常见坚果来验证方法的特异性;将巴西坚果DNA进行梯度稀释后验证方法的灵敏度;将0.5%、1%和1.5%3个浓度梯度的巴西坚果DNA重复检测20次来验证方法的稳定性。结果表明,本方法能够特异、灵敏、稳定地检测食品中的巴西坚果成分,检测低限为0.5%。此外,对7种市售食品样品的检测结果表明,该方法与食品标签标示的过敏原成分结果吻合率为100%,假阳性率和假阴性率均为0%。
文摘根据澳洲坚果豌豆蛋白AMP2基因序列,利用设计软件Primer Explorer Version 4设计并筛选了食品过敏原澳洲坚果的环介导等温扩增引物,对反应体系和反应条件进行优化,建立澳洲坚果的环介导等温扩增检测方法,结果判断可采用实时荧光法和荧光染料终点显色法。对该方法进行了特异性、灵敏度、稳定性评价,结果显示:该方法能够特异性、灵敏、稳定地检测食品中的澳洲坚果成分,检测低限为0.5%。此外,对7种市售食品样品的检测结果表明,该方法与食品标签标示的过敏原成分结果吻合率为100%,假阳性率和假阴性率均为0,在市售食品的过敏原成分检测上较商业化快速检测试纸条更加稳定可靠。
