2025年3月17日,国际顶级学术期刊《自然·遗传学》(Nature Genetics)刊发题为“Genomic analysis of 1325 Camellia accessions sheds light on agronomic and metabolic traits for tea plant improvement”的研究性论文。该研究...2025年3月17日,国际顶级学术期刊《自然·遗传学》(Nature Genetics)刊发题为“Genomic analysis of 1325 Camellia accessions sheds light on agronomic and metabolic traits for tea plant improvement”的研究性论文。该研究由福建省农业科学院茶叶研究所与中国农业科学院农业基因组研究所等多家单位合作完成。本研究通过对茶树及其近缘种的基因组进行深度重测序,构建了全面的茶树基因组遗传变异图谱,进而揭示了茶树的遗传多样性及其驯化状态。其结果为茶树的遗传进化和精准设计育种提供了有益见解以及重要参考资料。展开更多
With the approval of more and more genetically modified(GM)crops in our country,GM safety management has become more important.Transgenic detection is a major approach for transgenic safety management.Nevertheless,a c...With the approval of more and more genetically modified(GM)crops in our country,GM safety management has become more important.Transgenic detection is a major approach for transgenic safety management.Nevertheless,a convenient and visual technique with low equipment requirements and high sensitivity for the field detection of GM plants is still lacking.On the basis of the existing recombinase polymerase amplification(RPA)technique,we developed a multiplex RPA(multi-RPA)method that can simultaneously detect three transgenic elements,including the cauliflower mosaic virus 35S gene(CaMV35S)promoter,neomycin phosphotransferaseⅡgene(NptⅡ)and hygromycin B phosphotransferase gene(Hyg),thus improving the detection rate.Moreover,we coupled this multi-RPA technique with the CRISPR/Cas12a reporter system,which enabled the detection results to be clearly observed by naked eyes under ultraviolet(UV)light(254 nm;which could be achieved by a portable UV flashlight),therefore establishing a multi-RPA visual detection technique.Compared with the traditional test strip detection method,this multi-RPA-CRISPR/Cas12a technique has the higher specificity,higher sensitivity,wider application range and lower cost.Compared with other polymerase chain reaction(PCR)techniques,it also has the advantages of low equipment requirements and visualization,making it a potentially feasible method for the field detection of GM plants.展开更多
Objective:Osteoarthritis(OA)and sarcopenia are significant health concerns in the elderly,substantially impacting their daily activities and quality of life.However,the relationship between them remains poorly underst...Objective:Osteoarthritis(OA)and sarcopenia are significant health concerns in the elderly,substantially impacting their daily activities and quality of life.However,the relationship between them remains poorly understood.This study aims to uncover common biomarkers and pathways associated with both OA and sarcopenia.Methods:Gene expression profiles related to OA and sarcopenia were retrieved from the Gene Expression Omnibus(GEO)database.Differentially expressed genes(DEGs)between disease and control groups were identified using R software.Common DEGs were extracted via Venn diagram analysis.Gene ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)enrichment analyses were conducted to identify biological processes and pathways associated with shared DEGs.Protein-protein interaction(PPI)networks were constructed,and candidate hub genes were ranked using the maximal clique centrality(MCC)algorithm.Further validation of hub gene expression was performed using 2 independent datasets.Receiver operating characteristic(ROC)curve analysis was used to evaluate the predictive value of key genes for OA and sarcopenia.Mouse models of OA and sarcopenia were established.Hematoxylin-eosin and Safranin O/Fast Green staining were used to validate the OA model.The sarcopenia model was validated via rotarod testing and quadriceps muscle mass measurement.Real-time reverse transcription PCR(real-time RT-PCR)was employed to assess the mRNA expression levels of candidate key genes in both models.Gene set enrichment analysis(GSEA)was conducted to identify pathways associated with the selected shared key genes in both diseases.Results:A total of 89 common DEGs were identified in the gene expression profiles of OA and sarcopenia,including 76 upregulated and 13 downregulated genes.These 89 DEGs were significantly enriched in protein digestion and absorption,the PI3K-Akt signaling pathway,and extracellular matrix-receptor interaction.PPI network analysis and MCC algorithm analysis of the 89 common DEGs identified the top 17 candidate hub genes.Based on the differential expression analysis of these 17 candidate hub genes in the validation datasets,AEBP1 and COL8A2 were ultimately selected as the common key genes for both diseases,both of which showed a significant upregulation trend in the disease groups(all P<0.05).The value of area under the curve(AUC)for AEBP1 and COL8A2 in the OA and sarcopenia datasets were all greater than 0.7,indicating that both genes have potential value in predicting OA and sarcopenia.Real-time RT-PCR results showed that the mRNA expression levels of AEBP1 and COL8A2 were significantly upregulated in the disease groups(all P<0.05),consistent with the results observed in the bioinformatics analysis.GSEA revealed that AEBP1 and COL8A2 were closely related to extracellular matrix-receptor interaction,ribosome,and oxidative phosphorylation in OA and sarcopenia.Conclusion:AEBP1 and COL8A2 have the potential to serve as common biomarkers for OA and sarcopenia.The extracellular matrix-receptor interaction pathway may represent a potential target for the prevention and treatment of both OA and sarcopenia.展开更多
Objective To investigate the structural changes of rat thoracic aorta and changes in expression levels of Bmal1 and cyclins in thoracic aorta endothelial cells following heat stress.Methods Twenty male SD rats were ra...Objective To investigate the structural changes of rat thoracic aorta and changes in expression levels of Bmal1 and cyclins in thoracic aorta endothelial cells following heat stress.Methods Twenty male SD rats were randomized equally into control group and heat stress group.After exposure to 32℃for 2 weeks in the latter group,the rats were examined for histopathological changes and Bmal1 expression in the thoracic aorta using HE staining and immunohistochemistry.In the cell experiments,cultured rat thoracic aortic endothelial cells(RTAECs)were incubated at 40℃for 12 h with or without prior transfection with a Bmal1-specific small interfering RNA(si-Bmal1)or a negative sequence.In both rat thoracic aorta and RTAECs,the expressions of Bmal1,the cell cycle proteins CDK1,CDK4,CDK6,and cyclin B1,and apoptosis-related proteins Bax and Bcl-2 were detected using Western blotting.TUNEL staining was used to detect cell apoptosis in rat thoracic aorta,and the changes in cell cycle distribution and apoptosis in RTAECs were analyzed with flow cytometry.Results Compared with the control rats,the rats exposed to heat stress showed significantly increased blood pressures and lowered heart rate with elastic fiber disruption and increased expressions of Bmal1,cyclin B1 and CDK1 in the thoracic aorta(P<0.05).In cultured RTAECs,heat stress caused significant increase of Bmal1,cyclin B1 and CDK1 protein expression levels,which were obviously lowered in cells with prior si-Bmal1 transfection.Bmal1 knockdown also inhibited heat stress-induced increase of apoptosis in RTAECs as evidenced by decreased expression of Bax and increased expression of Bcl-2.Conclusion Heat stress upregulates Bmal1 expression and causes alterations in expressions of cyclins to trigger apoptosis of rat thoracic aorta endothelial cells,which can be partly alleviated by suppressing Bmal1 expression.展开更多
Background Verticillium dahliae,a soil-borne fungi,can cause Verticillium wilt,and seriously diminish the yield and quality of cotton.However,the pathogenic mechanism of V.dahliae is complex and not clearly understood...Background Verticillium dahliae,a soil-borne fungi,can cause Verticillium wilt,and seriously diminish the yield and quality of cotton.However,the pathogenic mechanism of V.dahliae is complex and not clearly understood at the moment.This study aimed to identify the high-affinity nicotinic acid transporter genes in V.dahliae.The gene expression profiles in V.dahliae following sensing of root exudates from susceptible and resistant cotton varieties were analyzed.The function of VdNAT1 in the pathogenic process of V.dahliae was studied using the tobacco rattle virus(TRV)-based host-induced gene silencing(HIGS)technique.Results Eight high-affinity nicotinic acid transporter genes were identified from V.dahliae through the bioinformatics method.Each protein contains a conserved major facilitator superfamily(MFS)domain,which belongs to the MFS superfamily.Evolutionary relationship analysis revealed that all 8 genes belong to the anion:cation symporter(ACS)subfamily.All proteins have transmembrane domains,ranging from 7 to 12.The expression levels of most VdNAT genes were significantly increased after induction by root exudates from susceptible cotton varieties.Silencing VdNAT1 gene by HIGS significantly inhibited the accumulation of fungal biomass in cotton plants,and alleviated the disease symptoms of cotton.Conclusions Eight VdNAT genes were identified from V.dahliae,and most VdNAT genes was up-regulated after induced by root exudates from susceptible cotton variety.In addition,VdNAT1 is required for the pathogenicity of V.dahliae.Overall,these findings will facilitate the pathogenic molecular mechanism of V.dahliae and provide candidate genes.展开更多
Project construction and development are an impor-tant part of future army designs.In today’s world,intelligent war-fare and joint operations have become the dominant develop-ments in warfare,so the construction and ...Project construction and development are an impor-tant part of future army designs.In today’s world,intelligent war-fare and joint operations have become the dominant develop-ments in warfare,so the construction and development of the army need top-down,top-level design,and comprehensive plan-ning.The traditional project development model is no longer suf-ficient to meet the army’s complex capability requirements.Projects in various fields need to be developed and coordinated to form a joint force and improve the army’s combat effective-ness.At the same time,when a program consists of large-scale project data,the effectiveness of the traditional,precise mathe-matical planning method is greatly reduced because it is time-consuming,costly,and impractical.To solve above problems,this paper proposes a multi-stage program optimization model based on a heterogeneous network and hybrid genetic algo-rithm and verifies the effectiveness and feasibility of the model and algorithm through an example.The results show that the hybrid algorithm proposed in this paper is better than the exist-ing meta-heuristic algorithm.展开更多
The learning algorithms of causal discovery mainly include score-based methods and genetic algorithms(GA).The score-based algorithms are prone to searching space explosion.Classical GA is slow to converge,and prone to...The learning algorithms of causal discovery mainly include score-based methods and genetic algorithms(GA).The score-based algorithms are prone to searching space explosion.Classical GA is slow to converge,and prone to falling into local optima.To address these issues,an improved GA with domain knowledge(IGADK)is proposed.Firstly,domain knowledge is incorporated into the learning process of causality to construct a new fitness function.Secondly,a dynamical mutation operator is introduced in the algorithm to accelerate the convergence rate.Finally,an experiment is conducted on simulation data,which compares the classical GA with IGADK with domain knowledge of varying accuracy.The IGADK can greatly reduce the number of iterations,populations,and samples required for learning,which illustrates the efficiency and effectiveness of the proposed algorithm.展开更多
The major cotton grown commercially in the world is white lint,but recently many people prefer to have garments made by natural colored cotton.This can be used directly in textile industries,avoiding the complicated a...The major cotton grown commercially in the world is white lint,but recently many people prefer to have garments made by natural colored cotton.This can be used directly in textile industries,avoiding the complicated and unsafe processes of bleaching and dying,and thus it is eco-friendly.However,little is known about the heredity of the colored lint gene in colored cotton.In the present study,展开更多
CIRAD(Montpellier,France) develops research activities centered on tropical and sub-tropical agricultural systems.Among others crops,cotton is the focus of a series of research programs in different disciplines from e...CIRAD(Montpellier,France) develops research activities centered on tropical and sub-tropical agricultural systems.Among others crops,cotton is the focus of a series of research programs in different disciplines from economics to breeding.Major areas in genetics and breeding relate to(1) genetic diversity,(2) cultivar development through classical and molecular breeding,and(3)展开更多
Genetic selection in pigs through BLUP was very successful. However, strong selection mainly on growth and number of born alive decreased fitness and reduced environmental changes that animals can tolerate especially ...Genetic selection in pigs through BLUP was very successful. However, strong selection mainly on growth and number of born alive decreased fitness and reduced environmental changes that animals can tolerate especially under suboptimal environments. Additional challenges are genetic differences between purebreds (selected animals) and crossbreds (commercial animals), and possibly different environments for these groups of animals. A successful genetic selection at this time requires comprehensive data for all levels of the pyramid, multitrait models for a variety of traits including categorical and survival, and software that can implement complicated models while supporting large data sets. Many projects in pig genetic evaluation are carried out at the University of Georgia. Those studies are supported by software family called BGF90.展开更多
Wild boar is one of the most important beast resources. It plays an important role in the maintenance of biological diversity. The genetic resources of wild boar can not only protect the genetic resources, but also im...Wild boar is one of the most important beast resources. It plays an important role in the maintenance of biological diversity. The genetic resources of wild boar can not only protect the genetic resources, but also improve the formation of new breeds in pigs. This paper summarized the advance on the main biological characteristics of wild boars, evolutionary origin between wild boars and domesticated pigs, and development and utilization of wild boars aimed to provide further insight into wild boar＇s genetic research and its resource protection.展开更多
Cells of organ systems are endowed with a relatively similar genome while epigenome niches keep varying chronologically and defined explicitly in the respective tissues.The genome of an individual is always influenced...Cells of organ systems are endowed with a relatively similar genome while epigenome niches keep varying chronologically and defined explicitly in the respective tissues.The genome of an individual is always influenced by parental,embryonic,tissue-specific,and environmental epigenomes and the same must have been the possible reason for invariable inquiries relating to familial,environmental and life style patterns in the preliminary investigations of diabetic complications.Unprecedented methylation of lysine residues of histones and cytosines of CpG islands of promoter DNA impede the transcription of genes and homocysteine is the metabolic key player of methyl groups.Gck and COX7A1 are the 2 examples in the present review to elucidate the epigenetic influence on the onset of diabetes.miRNAs are additional promising cellular components influencing both at transcriptional and translational levels and promoting either in favour or against(i.e.,feed back) TFs,signaling factors and proteins through their pliotropic effects and thus are reported to regulate cellular physiology.miR-124a and miR-9 are primarily endemic to nervous tissue and they are now being exploited in islets for their function in executing exocytosis of insulin,which of course is one of the fundamental canons of diabetes.miR-375 persuades beta cells for glucose-induced insulin gene expression.The current approach to evaluate the constellation of genes and their products involved in diabetes in huge number of samples through GWA studies may unravel intricacies involved in the management of diabetes and its associated consequences.展开更多
Our goal is to develop elite lines with low total gossypol levels in the seed using conventional genetic techniques.There are a number of ways to reduce seed gossypol,including mechanical
The Cotton Programme of CIRAD undertakesdifferent research programs aiming at utilizingDNA molecular markers for an applied molecularbreeding of cotton.These programs cover areasfrom marker-assisted selection for fibe...The Cotton Programme of CIRAD undertakesdifferent research programs aiming at utilizingDNA molecular markers for an applied molecularbreeding of cotton.These programs cover areasfrom marker-assisted selection for fiber qualityto functional genomic study of cotton fiberdevelopment.The present communication willgive an overview of major achievements in thesea reas.展开更多
The structure and shape of a cotton shrub aredetermined in result of combining theirelements:length and amount internodes of amain stem and fruit brunches,amount and shapeof leaf blades.Some lines of genetic collectio...The structure and shape of a cotton shrub aredetermined in result of combining theirelements:length and amount internodes of amain stem and fruit brunches,amount and shapeof leaf blades.Some lines of genetic collectionhave been crossed between each other for展开更多
The NSF Cotton Genome Centers EST projecthas released】36000 cotton fiber EST sequencesfrom Gossypium arboreum,an A-genome diploidspecies.Of the approximately 10000 genesexpressed in rapidly elongating cotton fibers,5...The NSF Cotton Genome Centers EST projecthas released】36000 cotton fiber EST sequencesfrom Gossypium arboreum,an A-genome diploidspecies.Of the approximately 10000 genesexpressed in rapidly elongating cotton fibers,50% or more encode unknown gene functions.The next challenge facing cotton researchers isdetermining the function of the fiber genes,andwhat role each plays in determiningagronomically important fiber traits.展开更多
Solanum species have a wide geographic distribution and show a large range of ecological adaptation,and thus have developed strong resistances to a wide range of pests,diseases and abiotic stresses.They represent uniq...Solanum species have a wide geographic distribution and show a large range of ecological adaptation,and thus have developed strong resistances to a wide range of pests,diseases and abiotic stresses.They represent unique material as a source of useful genes and allelic diversity for the tetraploid cultivated potato(Solanum tuberosum).Knowledge of the endosperm balance number(EBN) incompatibility system may be extremely useful for breeders in designing specific crosses schemes for potato breeding.EBN has been experimentally assigned to Solanum species after crosses with standard species whose EBN was arbitrarily established,and assuming the 2 ∶ 1 ratio as a prerequisite for normal endosperm development.The role of the EBN incompatibility system in potato breeding is strongly complemented by 2n gametes.Only 2n gametes can allow inter-EBN crosses and thus gene flow between sexually isolated species.This complementary role of EBN and 2n gametes not only facilitates gene introgression between inter-EBN species,but also maintains the ploidy integrity of the two parental species.Examples are given to illustrate how to use EBN in crossing schemes designed for 2x(2EBN) and 2x(1EBN) species.As increasing in the interest in exploiting exotic germplasm for breeding purposes,it is strongly believed that an understanding of EBN can be used for interspecific gene transfer in any crop species where an EBN-like system operates.展开更多
Genetics Institute Inc.(Cambridge,MA)已同意与山之口制药公司(东京,日本)成立一家50:50联合风险公司,共同将 Genetics Institute(GI)的骨成形蛋白(BMP)和其它药物商业化,并在日本销售。该合资公司将拥有这些药物的经营权,双方将分享...Genetics Institute Inc.(Cambridge,MA)已同意与山之口制药公司(东京,日本)成立一家50:50联合风险公司,共同将 Genetics Institute(GI)的骨成形蛋白(BMP)和其它药物商业化,并在日本销售。该合资公司将拥有这些药物的经营权,双方将分享公司在全世界范围内销售这些药物或者转让给第三者进行销售所获收益.GI展开更多
The cultivated Gossypium A genome diploid species G.arboreum and G.herbaceum and the allotetraploid species G.hirsutum and G.barbadense share common morphology for various floral traits,
文摘2025年3月17日,国际顶级学术期刊《自然·遗传学》(Nature Genetics)刊发题为“Genomic analysis of 1325 Camellia accessions sheds light on agronomic and metabolic traits for tea plant improvement”的研究性论文。该研究由福建省农业科学院茶叶研究所与中国农业科学院农业基因组研究所等多家单位合作完成。本研究通过对茶树及其近缘种的基因组进行深度重测序,构建了全面的茶树基因组遗传变异图谱,进而揭示了茶树的遗传多样性及其驯化状态。其结果为茶树的遗传进化和精准设计育种提供了有益见解以及重要参考资料。
基金the Experimental Technology Research Project of Zhejiang University(SYB202138)National Natural Science Foundation of China(32000195)。
文摘With the approval of more and more genetically modified(GM)crops in our country,GM safety management has become more important.Transgenic detection is a major approach for transgenic safety management.Nevertheless,a convenient and visual technique with low equipment requirements and high sensitivity for the field detection of GM plants is still lacking.On the basis of the existing recombinase polymerase amplification(RPA)technique,we developed a multiplex RPA(multi-RPA)method that can simultaneously detect three transgenic elements,including the cauliflower mosaic virus 35S gene(CaMV35S)promoter,neomycin phosphotransferaseⅡgene(NptⅡ)and hygromycin B phosphotransferase gene(Hyg),thus improving the detection rate.Moreover,we coupled this multi-RPA technique with the CRISPR/Cas12a reporter system,which enabled the detection results to be clearly observed by naked eyes under ultraviolet(UV)light(254 nm;which could be achieved by a portable UV flashlight),therefore establishing a multi-RPA visual detection technique.Compared with the traditional test strip detection method,this multi-RPA-CRISPR/Cas12a technique has the higher specificity,higher sensitivity,wider application range and lower cost.Compared with other polymerase chain reaction(PCR)techniques,it also has the advantages of low equipment requirements and visualization,making it a potentially feasible method for the field detection of GM plants.
基金supported by the National Natural Science Foundation of China(82060418).
文摘Objective:Osteoarthritis(OA)and sarcopenia are significant health concerns in the elderly,substantially impacting their daily activities and quality of life.However,the relationship between them remains poorly understood.This study aims to uncover common biomarkers and pathways associated with both OA and sarcopenia.Methods:Gene expression profiles related to OA and sarcopenia were retrieved from the Gene Expression Omnibus(GEO)database.Differentially expressed genes(DEGs)between disease and control groups were identified using R software.Common DEGs were extracted via Venn diagram analysis.Gene ontology(GO)and Kyoto Encyclopedia of Genes and Genomes(KEGG)enrichment analyses were conducted to identify biological processes and pathways associated with shared DEGs.Protein-protein interaction(PPI)networks were constructed,and candidate hub genes were ranked using the maximal clique centrality(MCC)algorithm.Further validation of hub gene expression was performed using 2 independent datasets.Receiver operating characteristic(ROC)curve analysis was used to evaluate the predictive value of key genes for OA and sarcopenia.Mouse models of OA and sarcopenia were established.Hematoxylin-eosin and Safranin O/Fast Green staining were used to validate the OA model.The sarcopenia model was validated via rotarod testing and quadriceps muscle mass measurement.Real-time reverse transcription PCR(real-time RT-PCR)was employed to assess the mRNA expression levels of candidate key genes in both models.Gene set enrichment analysis(GSEA)was conducted to identify pathways associated with the selected shared key genes in both diseases.Results:A total of 89 common DEGs were identified in the gene expression profiles of OA and sarcopenia,including 76 upregulated and 13 downregulated genes.These 89 DEGs were significantly enriched in protein digestion and absorption,the PI3K-Akt signaling pathway,and extracellular matrix-receptor interaction.PPI network analysis and MCC algorithm analysis of the 89 common DEGs identified the top 17 candidate hub genes.Based on the differential expression analysis of these 17 candidate hub genes in the validation datasets,AEBP1 and COL8A2 were ultimately selected as the common key genes for both diseases,both of which showed a significant upregulation trend in the disease groups(all P<0.05).The value of area under the curve(AUC)for AEBP1 and COL8A2 in the OA and sarcopenia datasets were all greater than 0.7,indicating that both genes have potential value in predicting OA and sarcopenia.Real-time RT-PCR results showed that the mRNA expression levels of AEBP1 and COL8A2 were significantly upregulated in the disease groups(all P<0.05),consistent with the results observed in the bioinformatics analysis.GSEA revealed that AEBP1 and COL8A2 were closely related to extracellular matrix-receptor interaction,ribosome,and oxidative phosphorylation in OA and sarcopenia.Conclusion:AEBP1 and COL8A2 have the potential to serve as common biomarkers for OA and sarcopenia.The extracellular matrix-receptor interaction pathway may represent a potential target for the prevention and treatment of both OA and sarcopenia.
文摘Objective To investigate the structural changes of rat thoracic aorta and changes in expression levels of Bmal1 and cyclins in thoracic aorta endothelial cells following heat stress.Methods Twenty male SD rats were randomized equally into control group and heat stress group.After exposure to 32℃for 2 weeks in the latter group,the rats were examined for histopathological changes and Bmal1 expression in the thoracic aorta using HE staining and immunohistochemistry.In the cell experiments,cultured rat thoracic aortic endothelial cells(RTAECs)were incubated at 40℃for 12 h with or without prior transfection with a Bmal1-specific small interfering RNA(si-Bmal1)or a negative sequence.In both rat thoracic aorta and RTAECs,the expressions of Bmal1,the cell cycle proteins CDK1,CDK4,CDK6,and cyclin B1,and apoptosis-related proteins Bax and Bcl-2 were detected using Western blotting.TUNEL staining was used to detect cell apoptosis in rat thoracic aorta,and the changes in cell cycle distribution and apoptosis in RTAECs were analyzed with flow cytometry.Results Compared with the control rats,the rats exposed to heat stress showed significantly increased blood pressures and lowered heart rate with elastic fiber disruption and increased expressions of Bmal1,cyclin B1 and CDK1 in the thoracic aorta(P<0.05).In cultured RTAECs,heat stress caused significant increase of Bmal1,cyclin B1 and CDK1 protein expression levels,which were obviously lowered in cells with prior si-Bmal1 transfection.Bmal1 knockdown also inhibited heat stress-induced increase of apoptosis in RTAECs as evidenced by decreased expression of Bax and increased expression of Bcl-2.Conclusion Heat stress upregulates Bmal1 expression and causes alterations in expressions of cyclins to trigger apoptosis of rat thoracic aorta endothelial cells,which can be partly alleviated by suppressing Bmal1 expression.
基金supported by National Natural Science Foundation of China(No.32160615).
文摘Background Verticillium dahliae,a soil-borne fungi,can cause Verticillium wilt,and seriously diminish the yield and quality of cotton.However,the pathogenic mechanism of V.dahliae is complex and not clearly understood at the moment.This study aimed to identify the high-affinity nicotinic acid transporter genes in V.dahliae.The gene expression profiles in V.dahliae following sensing of root exudates from susceptible and resistant cotton varieties were analyzed.The function of VdNAT1 in the pathogenic process of V.dahliae was studied using the tobacco rattle virus(TRV)-based host-induced gene silencing(HIGS)technique.Results Eight high-affinity nicotinic acid transporter genes were identified from V.dahliae through the bioinformatics method.Each protein contains a conserved major facilitator superfamily(MFS)domain,which belongs to the MFS superfamily.Evolutionary relationship analysis revealed that all 8 genes belong to the anion:cation symporter(ACS)subfamily.All proteins have transmembrane domains,ranging from 7 to 12.The expression levels of most VdNAT genes were significantly increased after induction by root exudates from susceptible cotton varieties.Silencing VdNAT1 gene by HIGS significantly inhibited the accumulation of fungal biomass in cotton plants,and alleviated the disease symptoms of cotton.Conclusions Eight VdNAT genes were identified from V.dahliae,and most VdNAT genes was up-regulated after induced by root exudates from susceptible cotton variety.In addition,VdNAT1 is required for the pathogenicity of V.dahliae.Overall,these findings will facilitate the pathogenic molecular mechanism of V.dahliae and provide candidate genes.
基金supported by the National Natural Science Foundation of China(724701189072431011).
文摘Project construction and development are an impor-tant part of future army designs.In today’s world,intelligent war-fare and joint operations have become the dominant develop-ments in warfare,so the construction and development of the army need top-down,top-level design,and comprehensive plan-ning.The traditional project development model is no longer suf-ficient to meet the army’s complex capability requirements.Projects in various fields need to be developed and coordinated to form a joint force and improve the army’s combat effective-ness.At the same time,when a program consists of large-scale project data,the effectiveness of the traditional,precise mathe-matical planning method is greatly reduced because it is time-consuming,costly,and impractical.To solve above problems,this paper proposes a multi-stage program optimization model based on a heterogeneous network and hybrid genetic algo-rithm and verifies the effectiveness and feasibility of the model and algorithm through an example.The results show that the hybrid algorithm proposed in this paper is better than the exist-ing meta-heuristic algorithm.
基金supported by the National Social Science Fund of China(2022-SKJJ-B-084).
文摘The learning algorithms of causal discovery mainly include score-based methods and genetic algorithms(GA).The score-based algorithms are prone to searching space explosion.Classical GA is slow to converge,and prone to falling into local optima.To address these issues,an improved GA with domain knowledge(IGADK)is proposed.Firstly,domain knowledge is incorporated into the learning process of causality to construct a new fitness function.Secondly,a dynamical mutation operator is introduced in the algorithm to accelerate the convergence rate.Finally,an experiment is conducted on simulation data,which compares the classical GA with IGADK with domain knowledge of varying accuracy.The IGADK can greatly reduce the number of iterations,populations,and samples required for learning,which illustrates the efficiency and effectiveness of the proposed algorithm.
文摘The major cotton grown commercially in the world is white lint,but recently many people prefer to have garments made by natural colored cotton.This can be used directly in textile industries,avoiding the complicated and unsafe processes of bleaching and dying,and thus it is eco-friendly.However,little is known about the heredity of the colored lint gene in colored cotton.In the present study,
文摘CIRAD(Montpellier,France) develops research activities centered on tropical and sub-tropical agricultural systems.Among others crops,cotton is the focus of a series of research programs in different disciplines from economics to breeding.Major areas in genetics and breeding relate to(1) genetic diversity,(2) cultivar development through classical and molecular breeding,and(3)
文摘Genetic selection in pigs through BLUP was very successful. However, strong selection mainly on growth and number of born alive decreased fitness and reduced environmental changes that animals can tolerate especially under suboptimal environments. Additional challenges are genetic differences between purebreds (selected animals) and crossbreds (commercial animals), and possibly different environments for these groups of animals. A successful genetic selection at this time requires comprehensive data for all levels of the pyramid, multitrait models for a variety of traits including categorical and survival, and software that can implement complicated models while supporting large data sets. Many projects in pig genetic evaluation are carried out at the University of Georgia. Those studies are supported by software family called BGF90.
文摘Wild boar is one of the most important beast resources. It plays an important role in the maintenance of biological diversity. The genetic resources of wild boar can not only protect the genetic resources, but also improve the formation of new breeds in pigs. This paper summarized the advance on the main biological characteristics of wild boars, evolutionary origin between wild boars and domesticated pigs, and development and utilization of wild boars aimed to provide further insight into wild boar＇s genetic research and its resource protection.
基金One of the authors(Sreerama Krupanidhi)is grateful to DST,and DBT,New Delhi,India,for providing funds through FIST and BIF programmes respectively during the time of which the present review is conceived.
文摘Cells of organ systems are endowed with a relatively similar genome while epigenome niches keep varying chronologically and defined explicitly in the respective tissues.The genome of an individual is always influenced by parental,embryonic,tissue-specific,and environmental epigenomes and the same must have been the possible reason for invariable inquiries relating to familial,environmental and life style patterns in the preliminary investigations of diabetic complications.Unprecedented methylation of lysine residues of histones and cytosines of CpG islands of promoter DNA impede the transcription of genes and homocysteine is the metabolic key player of methyl groups.Gck and COX7A1 are the 2 examples in the present review to elucidate the epigenetic influence on the onset of diabetes.miRNAs are additional promising cellular components influencing both at transcriptional and translational levels and promoting either in favour or against(i.e.,feed back) TFs,signaling factors and proteins through their pliotropic effects and thus are reported to regulate cellular physiology.miR-124a and miR-9 are primarily endemic to nervous tissue and they are now being exploited in islets for their function in executing exocytosis of insulin,which of course is one of the fundamental canons of diabetes.miR-375 persuades beta cells for glucose-induced insulin gene expression.The current approach to evaluate the constellation of genes and their products involved in diabetes in huge number of samples through GWA studies may unravel intricacies involved in the management of diabetes and its associated consequences.
文摘Our goal is to develop elite lines with low total gossypol levels in the seed using conventional genetic techniques.There are a number of ways to reduce seed gossypol,including mechanical
文摘The Cotton Programme of CIRAD undertakesdifferent research programs aiming at utilizingDNA molecular markers for an applied molecularbreeding of cotton.These programs cover areasfrom marker-assisted selection for fiber qualityto functional genomic study of cotton fiberdevelopment.The present communication willgive an overview of major achievements in thesea reas.
文摘The structure and shape of a cotton shrub aredetermined in result of combining theirelements:length and amount internodes of amain stem and fruit brunches,amount and shapeof leaf blades.Some lines of genetic collectionhave been crossed between each other for
文摘The NSF Cotton Genome Centers EST projecthas released】36000 cotton fiber EST sequencesfrom Gossypium arboreum,an A-genome diploidspecies.Of the approximately 10000 genesexpressed in rapidly elongating cotton fibers,50% or more encode unknown gene functions.The next challenge facing cotton researchers isdetermining the function of the fiber genes,andwhat role each plays in determiningagronomically important fiber traits.
文摘Solanum species have a wide geographic distribution and show a large range of ecological adaptation,and thus have developed strong resistances to a wide range of pests,diseases and abiotic stresses.They represent unique material as a source of useful genes and allelic diversity for the tetraploid cultivated potato(Solanum tuberosum).Knowledge of the endosperm balance number(EBN) incompatibility system may be extremely useful for breeders in designing specific crosses schemes for potato breeding.EBN has been experimentally assigned to Solanum species after crosses with standard species whose EBN was arbitrarily established,and assuming the 2 ∶ 1 ratio as a prerequisite for normal endosperm development.The role of the EBN incompatibility system in potato breeding is strongly complemented by 2n gametes.Only 2n gametes can allow inter-EBN crosses and thus gene flow between sexually isolated species.This complementary role of EBN and 2n gametes not only facilitates gene introgression between inter-EBN species,but also maintains the ploidy integrity of the two parental species.Examples are given to illustrate how to use EBN in crossing schemes designed for 2x(2EBN) and 2x(1EBN) species.As increasing in the interest in exploiting exotic germplasm for breeding purposes,it is strongly believed that an understanding of EBN can be used for interspecific gene transfer in any crop species where an EBN-like system operates.
文摘Genetics Institute Inc.(Cambridge,MA)已同意与山之口制药公司(东京,日本)成立一家50:50联合风险公司,共同将 Genetics Institute(GI)的骨成形蛋白(BMP)和其它药物商业化,并在日本销售。该合资公司将拥有这些药物的经营权,双方将分享公司在全世界范围内销售这些药物或者转让给第三者进行销售所获收益.GI
文摘The cultivated Gossypium A genome diploid species G.arboreum and G.herbaceum and the allotetraploid species G.hirsutum and G.barbadense share common morphology for various floral traits,
