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Optimization of PCR System in EST-SSR Analysis of Phytophthora infestans
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作者 WANG Jianan LU Wenhe +3 位作者 JIN Guanghui BAI Yamei LI Wenxia HAN Yingpeng 《Journal of Northeast Agricultural University(English Edition)》 CAS 2010年第1期20-26,共7页
Late blight caused by the oomycete Phytophthora infestans Montagne de Bary is a devastating disease on potato production. A total of six parameters affecting the PCR system in P. infestans were investigated based on t... Late blight caused by the oomycete Phytophthora infestans Montagne de Bary is a devastating disease on potato production. A total of six parameters affecting the PCR system in P. infestans were investigated based on the template DNA of the isolate HH06-23 and EST-SSR primer pair Pi08N. The results showed that the optimal annealing temperature was 63 ℃, and the optimum PCR system of EST-SSR was 25 ng template DNA, 0.5 mmol·L^-1 dNTPs, 2 μL 10×Buffer (Mg^2+ free), 1.75 mmol·L^-1 MgCl2, 15 pmol primer, and 1.2 U Taq DNA polymerase in total 20 μL reaction system. The PCR program was initial denaturation at 94℃ for 2 rain, followed by 35 cycles of 94℃ for 30 s, 63℃ for 30 s, and 72℃ for 30 s, then a final extension step was 72℃ for 7 min, and held at 4℃. In addition, using the optimal PCR system, a total of 20 isolates of P. infestans were used for testing the stability and polymorphism of the PCR amplification. The clarity and abundant polymorphism indicated that this system was stable and suitable for researching the genetic diversity ofP. infestans population. 展开更多
关键词 Solanum tuberosum phytophthora infestans EST-SSR PCR
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Analysis on Genotypic Differentiation of Phytophthora infestans by Using Random Amplified Polymorphic DNA (RAPD)
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作者 ZHANG Xuanzhe,and XU Shengjun College of Agriculture,Northeast Agricultural University,Harbin 150030,China 《Journal of Northeast Agricultural University(English Edition)》 CAS 2010年第2期7-14,共8页
A total of 104 isolates including two Korean isolates and three Japanese isolates of Phytophthora infestans collected from Heilongjiang and Jilin Provinces from 2006 to 2008 were used to determine their mating types,m... A total of 104 isolates including two Korean isolates and three Japanese isolates of Phytophthora infestans collected from Heilongjiang and Jilin Provinces from 2006 to 2008 were used to determine their mating types,metalaxyl resistance,and RAPD genotypes.All the isolates of P.infestans collected from Heilongjiang and Jilin Provinces belonged to A 1 mating type,and no A 2 mating type was detected.Frequencies of metalaxyl resistant isolates were 94.4%,47.8% and 75.0% in 2006,2007 and 2008,respectively.Accord... 展开更多
关键词 phytophthora infestans genotypic differentiation RAPD
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Analysis of Population Genetic Change to Single Oospore Strains of Phytophthora infestans
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作者 Zhang Xuan-zhe Xu Hao-ran +5 位作者 Zhu Er-long Li Yuan-yuan Chen Su-hui Qian Bao-hong Ai Xin Pang Lin 《Journal of Northeast Agricultural University(English Edition)》 CAS 2023年第2期20-31,共12页
The occurrence of sexual reproduction accelerates the population genetic variation of Phytophthora infestans and makes it more difficult to control.The systematic analysis of the differentiation of phenotype(mating ty... The occurrence of sexual reproduction accelerates the population genetic variation of Phytophthora infestans and makes it more difficult to control.The systematic analysis of the differentiation of phenotype(mating type and metalaxyl sensitivity)and genotype(mtDNA haplotype and SSR genotype)of 65 single oospore strains of P.infestans was carried out in this article.Five test strains were isolated from Heilongjiang Province and Mongolia Autonomous Region.The experiment results showed that the isolation ratio of metalaxyl resistance(MR:HR)of single oospore strains produced through the cross of medium resistance and high resistant parents was 18:13;the isolation ratio of the metalaxyl resistance(S:MR:HR)of single oospore strains produced through the cross of sensitive and high resistant parents was 4:12:7.The progenies of single oospore strains produced through self-fertility parents with medium resistance were all of the medium resistance.The mating types A1:A2 was greater than 1:1 in single oospore strains of the progenies,which did not conform to the Mendel's law of inheritance.All single oospore strains of the progenies inherited mitochondrial DNA fragments from only one parent.Sexual recombination of single oospore strains was verified by using two pairs of SSR primers(Pi4B and Pi4G).At the locus of Pi4B and Pi4G in the cross of KS-37 and KS-25,the separation frequencies of allele were 19:12 and 14:17,respectively.They produced two new genotype strains.This study could provide a basis for formulating disease control strategies. 展开更多
关键词 phytophthora infestans single oospore strain phenotypic differentiation genotypic differentiation
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