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Construction of CD8^(+)T cell-associated Risk Model in Hepatocellular Carcinoma Based on Bulk and Single-cell RNA-seq Data
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作者 ZHANG Xin-Tong ZHU Jian-Jun +10 位作者 WU Jin WU Hao LU Fan ZHANG Wen-Tao chang jing-jia TANG Ting OU Zhi-Gao JIA Feng-Feng LI Li YU Peng-Fei LIU Ming 《中国生物化学与分子生物学报》 北大核心 2025年第10期1511-1528,共18页
Hepatocellular carcinoma(HCC),which is essentially primary liver cancer,is closely related to CD8^(+)T cell immune infiltration and immune suppression.We constructed a CD8^(+)T cells related risk score model to predic... Hepatocellular carcinoma(HCC),which is essentially primary liver cancer,is closely related to CD8^(+)T cell immune infiltration and immune suppression.We constructed a CD8^(+)T cells related risk score model to predict the prognosis of HCC patients and provided therapeutic guidance based on the risk score.Using integrated bulk RNA sequencing(RNA-seq)and single-cell RNA sequencing(scRNA-seq)datasets,we identified stable CD8^(+)T cell signatures.Based on these signatures,a 3-gene risk score model,comprised of KLRB1,RGS 2,and TNFRSF1B was constructed.The risk score model was well validated through an independent external validation cohort.We divided patients into high-risk and low-risk groups according to the risk score and compared the differences in immune microenvironment between these two groups.Compared with low-risk patients,high-risk patients have higher M2-type macrophage content(P<0.0001)and lower CD8^(+)T cells infiltration(P<0.0001).High-risk patients predict worse response to immunotherapy treatment than low-risk patients(P<0.01).Drug sensitivity analysis shows that PI3K-β inhibitor AZD6482 and TGFβRII inhibitor SB505124 may be suitable therapies for high-risk patients,while the IGF-1R inhibitor BMS-754807 or the novel pyrimidine-based anti-tumor metabolic drug Gemcitabine could be potential therapeutic choices for low-risk patients.Moreover,expression of these 3-gene model was verified by immunohistochemistry.In summary,the establishment and validation of a CD8^(+)T cell-derived risk model can more accurately predict the prognosis of HCC patients and guide the construction of personalized treatment plans. 展开更多
关键词 hepatocellular carcinoma(HCC) CD8^(+)T cell risk scoring model tumor immunity drug sensitivity
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CYP27A1对肝细胞癌预后的影响及生物学作用 被引量:3
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作者 张昕彤 吴昊 +5 位作者 胡艳芬 张文桃 畅靖嘉 朱剑军 李莉 刘铭 《解放军医学杂志》 CAS CSCD 北大核心 2024年第4期387-395,共9页
目的分析细胞色素P450家族27亚家族A成员1(CYP27A1)对肝细胞癌(HCC)预后的影响及生物学作用,并初步探讨其影响HCC生长的分子机制。方法基于癌症基因数据库(TCGA)分析CYP27A1在HCC中的表达情况及其与HCC患者预后的关系;基于CYP27A1表达... 目的分析细胞色素P450家族27亚家族A成员1(CYP27A1)对肝细胞癌(HCC)预后的影响及生物学作用,并初步探讨其影响HCC生长的分子机制。方法基于癌症基因数据库(TCGA)分析CYP27A1在HCC中的表达情况及其与HCC患者预后的关系;基于CYP27A1表达量中位值,将样本分为CYP27A1高表达组(n=170)与CYP27A1低表达组(n=170),利用基因集富集分析(GSEA)分别对两组进行基因集富集分析;免疫荧光染色检测及数据库查找CYP27A1蛋白亚细胞定位;构建过表达CYP27A1质粒,转染HCC细胞MHCC-97H和HCCLM3,设置阴性对照组(转染空载质粒)与CYP27A1过表达组(转染过表达CYP27A1重组质粒)。采用CCK-8法、流式细胞仪、活性氧(ROS)荧光探针等检测过表达CYP27A1对HCC细胞活力、凋亡及ROS生成的影响;结合生物信息学分析CYP27A1与ROS生成相关基因及HCC增殖相关基因表达的相关性。结果与正常肝组织比较,HCC组织中CYP27A1 mRNA表达量明显降低(P<0.01)。CYP27A1表达与HCC患者性别、T分期、肿瘤分级和肿瘤分期有关(P<0.05)。CYP27A1低表达组总生存率明显低于高表达组(P<0.01)。GSEA富集分析结果显示,CYP27A1低表达组HCC“干性”亚类和“增殖”亚类基因集水平升高。在MHCC-97H和HCCLM3细胞中,CYP27A1主要定位于细胞核;在HepG2细胞中,CYP27A1主要定位于线粒体。与阴性对照组比较,过表达CYP27A1后,HCC细胞活力下降(P<0.01)、ROS水平降低(P<0.05),而细胞凋亡水平无明显改变(P>0.05)。CYP27A1与抑制ROS生成相关基因表达呈正相关(P<0.05),抑制ROS生成相关基因与HCC增殖相关基因表达呈负相关(P<0.05)。结论CYP27A1在HCC中呈低表达,下调CYP27A1可能通过促进ROS生成促进HCC恶性生长。 展开更多
关键词 肝细胞癌 细胞色素P450家族27亚家族A成员1 恶性生长
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